| 1) What were the actual beginning and ending sites of each exon in
your genomic sequence as localized by FrameAlign? |
|
| 2) What were all of the signals found associated with the start of
transcription or translation of your genomic sequence that turned
out likely to be real? Name each signal site with its exact
location and name the GCG program that discovered that particular site. |
|
| 3) What were all of the signals found associated with the end of
transcription or translation of your genomic sequence that turned
out likely to be real? Name each signal site with its exact
location and name the GCG program that discovered that particular site. |
|
| 4) What were all of the signals found associated with exon/intron
splice sites in your genomic sequence that turned
out likely to be real? Name each signal site with its exact cut
location and name the GCG program that discovered that particular site. |
|
| 5) What content phenomenon, positive or negative, discoverd by TestCode
corresponded to reality? Give me approximate begining and ending
locations and the type of phenomenon of each. |
|
| 6) What content phenomenon, positive or negative, discoverd by CodonPreference
corresponded to reality? Give me approximate begining and ending
locations, the frame, and the type of phenomenon of each. |
|
| 7) How well did the WWW gene finding server that you used work? Name
the server and describe its results correspondence to reality. |
|
