| 1) What were the actual beginning and ending sites of each exon in
your genomic sequence as localized by FrameAlign? |
|
| 2) What were all of the signals found associated with the start of
transcription or translation of your genomic sequence that turned
out likely to be real? Name each signal site with its exact
location and name the GCG or EMBOSS program that discovered
that particular site. |
|
| 3) What were all of the signals found associated with the end of
transcription or translation of your genomic sequence that turned
out likely to be real? Name each signal site with its exact
location and name the GCG or EMBOSS program that discovered
that particular site. |
|
| 4) What were all of the signals found associated with exon/intron
splice sites in your genomic sequence that turned
out likely to be real? Name each signal site with its exact cut
location and name the GCG or EMBOSS program that discovered
that particular site. |
|
| 5) What content phenomenon, positive or negative, discoverd by
EMBOSS's TCode and Wobble corresponded to reality? Give me
approximate begining and ending locations and the type of
phenomenon (the Fickett randomness statistic or third position
GC bias along with whether it predicted coding or noncoding) of
each region. |
|
| 6) What content phenomenon, positive or negative, discoverd by
EMBOSS's SyCo corresponded to reality? What codon preference
table did you specify? Give me approximate begining and ending
locations, the frame, and whether it was predicted to be coding
or noncoding of each region. |
|
| 7) How well did the WWW gene finding server that you used work? Name
the server that you used and describe its results correspondence
to reality. |
|
