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BioInformatics and the InterNet: the World Wide Web

Some of my favorite sites for molecular biology, biocomputing education, sequence analysis, and general bioinformatics:

Site	URL (Uniform Resource Locator)	Content

	biocomputing servers USA
Natnl Cntr Biotech Info	http://www.ncbi.nlm.nih.gov/	databases/analysis/software
PIR/NBRF	http://www-nbrf.georgetown.edu/	protein sequence database
ProteinDataBank	http://www.rcsb.org/pdb/	3D mol structure database
Molecules To Go	http://molbio.info.nih.gov/cgi-bin/pdb	3D biomol visualization
IUBIO Biology Archive	http://iubio.bio.indiana.edu/	database/software archive

	biocomputing servers Canada
Univ Montreal MegaSun	http://megasun.bch.umontreal.ca/	database/software archive

	biocomputing servers Japan
Japan's GenomeNet Server	http://www.genome.ad.jp/	databases/analysis/software

	biocomputing servers Europe
European Mol Bio Lab	http://www.embl-heidelberg.de/	databases/analysis/software
European Bioinfo Lab	http://www.ebi.ac.uk/	databases/analysis/software
The Sanger Institute	http://www.sanger.ac.uk/	databases/analysis/software
Swiss Inst Bioinfo Server	http://www.expasy.ch/	databases/analysis/software

	specifically genomes
EBI/Sanger's Ensembl	http://www.ensembl.org/index.html	genome project browser
UCSC Genome Browser	http://genome.ucsc.edu/	genome project browser
DCode & ECR Browser	http://www.dcode.org/	Lawrence Livermore comparative genomics
The Genome DataBase	http://www.gdb.org/	human genome project
Stanford Genomic Resource	http://genome-www.stanford.edu/	various genome projects
Inst for Genomic Research	http://www.tigr.org/	microbial genome projects
HIV Sequence Database	http://hiv-web.lanl.gov/	HIV epidemeology seq DB

	biocomputing tool collections
Baylor Search Launcher	http://searchlauncher.bcm.tmc.edu/	sequence search launcher
Pedro's BioMol Rsrch Tools	http://www.biophys.uni-duesseldorf.de/BioNet/Pedro/research_tools.html	extensive bookmark list
Harvard Bio Laboratories	http://golgi.harvard.edu/BioLinks.html	nice biolinks lists
BioToolKit	http://www.biosupplynet.com/cfdocs/btk/btk.cfm	annotated molbio tool links

	molecular evolution
Marine Bio Lab Workshop	http://workshop.molecularevolution.org	premiere mol evol course
Felsenstein's PHYLIP site	http://evolution.genetics.washington.edu/phylip.html	phylogenetic inference
The Tree of Life	http://tolweb.org/tree/phylogeny.html	overview of all phylogeny
Ribosomal Database Project	http://rdp.cme.msu.edu	databases/analysis/software

	biosystems integration
Metabolism+	http://www-unix.mcs.anl.gov/compbio/default.html	metabolic reconstructions

	how to keep current
BIOSCI/BIONET	http://net.bio.net	biologists' news groups

	biology education
Access Excellence	http://www.accessexcellence.org/	biology teaching and learning
CELLS alive!	http://www.cellsalive.com/	animated microphotography
SnarkWare FAQ	http://www.beakerware.com/bioedusoft/	bio ed software

	biocomputing education
Wentian Li's List	http://www.nslij-genetics.org/bioinfotraining/	sorted geographically
Bielefield List	http://www.techfak.uni-bielefeld.de/bcd/Curric/syllabi.html	sorted by date
UT Austin List	http://biotech.icmb.utexas.edu/pages/bioinform/biprograms_us.html	sorted by degree
Intrntl Soc Comp Bio	http://www.iscb.org/conf_edu.shtml	conferences, courses, programs
Univ Wash CMB	http://depts.washington.edu/cmolbiol/	Doctorate program

	commercial software
Genetics Computer Group	http://www.accelrys.com/products/gcg/	sequence analysis package




Steve's Home \| Workshop Page \| SCS \| Biology \| copyright © 2006 Steven M. Thompson, stevet@bio.fsu.edu