PDF Links to
Primary Literature
Resources for
Fall 2024 Class
- Bean B. 2007. The
action potential in mammalian central neurons. Nature Reviews 8: 451-465.
- Fundamental Physiological
Recordings. Chapters 1-3; Aidley.
- Background on Electricity.
Chapters 1, 6-7; Gerrish.
- Watch Rod MacKinnon's Nobel Lecture on Potassium
Channels – https://www.nobelprize.org/prizes/chemistry/2003/mackinnon/lecture/
- Gonzalez et al., 2012. K+ Channels: Function-Structural Overview. Comprehensive Physiology 2:2087-2149.
- Tao et al., 2012. A gating charge transfer center in voltage sensors. Science. 328: 67-73.
- Sun et al., 2020. Structural basis of human KCNQ1 modulation and gating. Cell. 180: 340-347.
- Wu et al., 2024. Disease-causing slack potassium channel mutations produce opposite effectson excitability of excitory and inhibitory neurons. Cell Reports. 43: 113904.
- Sanchez-Vivas et al., 2021. GABAB Receptors: Modulation of thalamacortical dynamics and synaptic plasticity. Neuroscience 456: 131-142.
- Vigot et al., 2006. Differential compartamentalization and distinct functions of GABAB receptor variants. Neuron 50: 589-601.
- Koppensteiner et al., 2024. GABAA receptors induce phasic release...PNAS 121(8): e2301449121.
- Dixon et al., 2014. GABAA receptor alpha and gamma subunits shape synaptic currents via different mechanisms. JBC 289: 5399-5411.
- Salgado et al., 2023. NaX Channel Is a Physiological [Na+] Detector in Oxytocin- and Vasopressin-Releasing Magnocellular Neurosecretory Cells of the Rat Supraoptic Nucleus. J Neuroscience. 43(49): 8306-8316.
- Sarno et al., 2022. Slow Inactivation of Sodium Channels Contributes to Short-Term Adaptation in Vomeronasal Sensory Neurons. eNeuro 9(3): 0471.
- Sula et al., 2017. The complete structure of an activated open sodium channel. Nature Communications. 8:14205.
- Lara-Rutz et al., 2015. Voltage-gated sodium channels: Structure, function, pharmacology, and clinical implications. J. Med Chem.58: 7093 - 7118.
- Catterall, 2011. Voltage-gated calcium channels. Cold Spring Harbor Press.
- Harding et al., 2023. Differential regulation of Cav3.2 and Cav2.2 calcium channels
by CB1 receptors and cannabidiol. British J. Pharm. 180: 116-1633.
- Bi et al., 2021. The ZAR1 resistosome is a calcium-permeable
channel triggering plant immune signaling. Cell 184, 3528–3541.
- Harding et al., 2021. The T-type calcium channel antagonist, Z944, reduces spinal
excitability and pain hypersensitivity. Br. J. Pharm. 178: 3517- 3532.
- Stotling et al., 2014. CLC channel function and dysfunction in health and disease. Frontiers in Physiology 5: 378.
- Yarotskyy et al., 2022. Chloride channels with ClC-1-like properties differentially regulate the
excitability of dopamine receptor D1- and D2-expressing striatal medium spiny neurons. Am. J. Physiol. Cell Physiol. 322: C395–C409
- Reisert et al., 2024. The Ca2+-activated Cl- channel TMEM16B shapes the response time course of olfactory
sensory neurons. BioRXiv. https://doi.org/10.1101/2024.05.18.594801.
- Hammoud et al., 2020. Insulin differentially modulates GABA signalling in hippocampal
neurons and, in an age-dependent manner, normalizes GABA-activated currents in the tg-APPSwe mouse model of Alzheimer’s disease. Acta. Physiol. 232:e13623.
- Ranade et al., 2015. Mechanically activated ion channels. Neuron. 87(6): 1162–1179.
- Newton et al., 2016. Second Messengers. Cold Spring Harbor Press.
- Hernandez-Clavijo et al., 2023. Shedding light on human olfaction:
Electrophysiological recordings from sensory neurons in acute slices of olfactory epithelium. iScience. 26, 107186.
- Knoepp et al., 2020. Shear force sensing of epithelial Na+ channel (ENaC) relies on N-glycosylated asparagines in the palm
and knuckle domains of αENaC. PNAS 117(1): 717-726.
- Geng et al., 2020. A Plug-and-Latch Mechanism for Gating the Mechanosensitive Piezo Channel. Neuron 106, 438–451
- Mandelblat-Cerf et al. 2015. Arcuate hypothalamic AgRP and putative
POMC neurons show opposite changes in
spiking across multiple timescales. ELife. 4:e07122.
- Schreck et al., 2022. State-dependent olfactory processing in freely behaving mice. Cell Report. 8(9): 110450.
- Patterson et al., 2013. Odor representations in the olfactory bulb evolve after
the first breath and persist as an odor after image. PNAS. August: E3340–E3349.
- Buzsáki et al., 2012. The Origins of Extracellular Fields and Currents. Nature Neuroscience Reviews 13: 407
- Spira and Hai., 2013. Multielectrode Array Technologies for Neuroscience and Cardiology. Nature Nanotechnology. 8:83.
- Vahle-Hinz and Deutche, 2002. What can in vivo electrophysiology in animal models tell us about
mechanisms of anaesthesia? Br. J. Anesthesia. 89: 123-142.
- Lima et al., 2009. PINP: A New Method of Tagging Neuronal Populations
for Identification during In Vivo Electrophysiological
Recording. PLoS 1. Volume 4 | Issue 7 | e6099.
- Das et al., 2023. Large-scale recording of neuronal activity in
freely-moving mice at cellular resolution. Nature Communications. 14:6399.
- Zhang et al., 2023. Fast and sensitive GCaMP calcium indicators
for imaging neural populations. Nature. 615: 884.
- Bando et al., 2019. Genetic voltage indicators. BMC Biology 17:71.
- Storace and Cohen, 2018. Measuring the olfactory bulb input-output
transformation reveals a contribution to the
perception of odorant concentration invariance. Nature Communications. 10.1038.
- Abdelfattah et al., 2019. Bright and photostable chemigenetic
indicators for extended in vivo
voltage imaging. Science. 364, 699–704.
- Grimm et al., 2024. Two-photon voltage imaging with rhodopsin-based sensors. bioRxiv preprint.
- In Vivo NMR Spectroscopy: Principles and Techniques, Third Edition. Robin A. de Graaf.
© 2019 John Wiley & Sons Ltd. Published 2019 by John Wiley & Sons Ltd.
- Marion, D., 2013. An Introduction to Biological NMR
Spectroscopy. The American Society for Biochemistry and Molecular Biology, Inc.
- Lyukmanova et al., 2007. Bacterial Expression, NMR, and Electrophysiology Analysis of
Chimeric Short/Long-chain -Neurotoxins Acting on
Neuronal Nicotinic Receptors*. J. Biol. Chem. VOL. 282, NO. 34, pp. 24784–24791.
- Soni et al., 2021. Brain energy metabolism in
intracerebroventricularly
administered streptozotocin
mouse model of Alzheimer’s disease:
A 1H-[13C]-NMR study. Journal of Cerebral Blood Flow and Metabolism. Vol. 41(9) 2344–2355.
- Toth et al., 2024. Direct modulation of TRPM8 ion
channels by rapamycin and analog
macrolide immunosuppressants. /eLife.97341.1.
Archived
Resources from Fall 2021 Class
- Bean B. 2007. The
action potential in mammalian central neurons. Nature Reviews 8: 451-465.
- Fundamental Physiological
Recordings. Chapters 1-3; Aidley.
- Background on Electricity.
Chapters 1, 6-7; Gerrish.
- Watch Rod MacKinnon's Nobel Lecture on Potassium
Channels - https://www.nobelprize.org/prizes/chemistry/2003/mackinnon/lecture/
- Gonzalez et al., 2012. K+
Channels: Function-Structural Overview. American Compr
Physiol2: 2087-2149.
- Papanikolaou
et al., 2020. A critical role for the inward rectifying potassium channel
Kir7.1 in oligodendrocytes of the mouse optic nerve. Brain Struct Function
225:925–934.
- Ainscow
et al., 2002. Dynamic imaging of free cytosolic ATP concentration during
fuel sensing by rat hypothalamic neurones: evidence
for ATPindependent control of ATP-sensitive K+
channels. J. Physiol. 544.2:429–445.
- Petra and Stern, 2017. A
type K channel contribute to the prorenin increase in firing frequency in
hypothalamic vasopressin neurosecretory neurons. Am. J. Pysiol. Heart Circ Physiol. 313:H548-H557.
- Baker et al., 2019. Acoustic
Pattern Recognition and Courtship Songs: Insights from Insects. Annu. Rev. Neurosci.
42:129–47
- Ni et al., 2021. The
structure and function of ionotrophic receptors
in Drosophila. Front Mol Neurosci 13: 638839.
- Naumov
et al., 2019. Analysis of excitatory and inhibitory neuron types in the
inferior colliculus based on Ih properties. J Neurophysiol 121: 2126–2139.
- Alluri et al., 2016.
Phasic, suprathreshold excitation and sustained inhibition underlie
neuronal selectivity for short-duration sounds. PNAS 113(13):E1927-35.
- Naud
et al., 2015. Counting on dishabitulation:a
circuit motif for internval counting and
selectivity in the anurian auditory system. J Neurophysiol 114: 2804-2815.
- Baker et al., 2019. Acoustic
Pattern Recognition and Courtship Songs: Insights from Insects. Annu. Rev. Neurosci.
42:129–47
- Zhang and Bean, 2021.
Cannabinoid inhibition of murine primary nocioreceptors:
Tight binding to slow inactivated states of Nav1.8 channels. J Neurosci 41(30): 6371-6387.
- MacDonald et al., 2021. A
central mechanism of analgesia in mice and humans lacking the sodium
channel, Nav1.7. Neuron 109: 1497-1512.
- Nunes and Kuner T, 2018. Axonal sodium channel NaV1.2 drives
granule cell dendritic GABA release and rapid odor discrimination. PLoS Biol 16 (8): e2003816.
- Simms and Zaponi, 2014. Neuronal voltage-gated calcium channels:
Structure, function, and dysfunction. Neuron 82: 24-45.
- Brunet, Gold, and Ngai,
1996. General anosmia caused by a targeted disruption of the mouse
olfactory cyclic nucleotide-gated cation channel. Neuron 17: 681-693.
- MacDonald et al., 2021.
A central mechanism of analgesia in mice and humans lacking the sodium
channel, Nav1.7. Neuron 109: 1497-1512.
- Zufall, Firestein, and
Shepherd. 1991. Analysis of single cyclic nucleotide-gated channels in
olfactory receptors cells. J Neurosci. 11(11):
3573-3580.
- Pietra
et al. 2016. The Ca-activated Cl channel TMEM16B....J. Gen. Physiol.
148(4): 292-311.
- Benarroch,
EE, 2015. Ion channels in nociceptors. American Acad
Neurobiol. 84: 1153-1164
- Koroleva
et al., 2020. Protective Effects of Hydrogen Sulfide Against the
ATP-Induced Meningeal Nociception. Front. Cell. Neurosci.
14:266.
- Sadler et al., 2021.
Transient receptor potential canonical 5 mediates inflammatory mechanical
and spontaneous pain in mice. Sci Trans Medicine 13(595):eabd7702.
- Okada et al., 1998.
Molecular cloning and functional characterization of a novel
receptor-activated TRP Ca2+ channel from mouse brain. J. Biol. Chem.
273(17):10279-87.
- Papapoulodous
and Verkman, 2013. Aquaporin water channels in
the nervous system. Nature Rev Neurosci.
14(4):265-77.
- Murata et al., 2000.
Structural determinants of water permeation through aquaporin-1. Nature.
407(6804):599-605
- Ozu
et al., 2013. Human AQP1 Is a Constitutively Open Channel that Closes by a
Membrane-Tension-Mediated Mechanism. Biophysical J. 104(1): 85-95.
- Nemeth-Cahalan
and Hall. 2000. pH and Calcium Regulate the Water Permeability of Aquaporin
0*. 275(10):6777–6782
- Urban and Roth,
2015. DREADDs (designer receptors exclusively activated by designer
drugs): chemogenetic tools with therapeutic
utility. Annu Rev Pharmacol
Toxicol . 55:399-417.
- Roth, 2018.
DREADDS for Neuroscientists. Neuron 89:683-694.
- McCarthy et al., 2017.
DREADD-induced silencing of the medial amygdala reduces the preference for
male pheromones and the expression of lordosis in estrous female mice. Eur
J Neurosci 46(4):2035-2046.
- Meissner-Bernard et
al., 2019. Encoding of Odor Fear Memories in the Mouse Olfactory Cortex. Curr Biol 29(3):367-380.
- DiBenedictis
et al., 2015. DREADD-Induced Silencing of the Medial Olfactory Tubercle
Disrupts the Preference of Female Mice for Opposite-Sex Chemosignals(1,2,3). eNeuro.
2(5):ENEURO.0078-15.2015.
- Haumesser
et al., 2017. Acute In Vivo Electrophysiological Recordings of Local Field
Potentials and Multi-unit Activity from the Hyperdirect
Pathway in Anesthetized Rats. JOVE 124 | e55940
- Broussard et al., 2016.
Dopamine Regulates Aversive Contextual Learning and Associated In Vivo
Synaptic Plasticity in the Hippocampus. Cell Reports 14, 1930–1939.
- Kodandaramaiah
et al., 2012. Automated whole-cell patch-clamp electrophysiology of
neurons in vivo Nature Methods 9(6): 585 -590.
- Sizemore et al.,
2016. Viral vector-based tools advance knowledge of basal ganglia anatomy
and physiology. J Neurophysiol 115: 2124 –2146.
- . Aschauer
et al., 2013. Analysis of Transduction Efficiency, Tropism and Axonal
Transport of AAV Serotypes 1, 2, 5, 6, 8 and 9 in the Mouse Brain. PloS1
Volume 8 | Issue 9 | e76310.
- Kim et al., 2017.
Integration of optogenetics with complementary methodologies in systems
neuroscience. Nat Rev Neurosci. 18(4): 222–235.
- Zhang et al., 2020. An
excitatory ventromedial hypothalamus to paraventricular thalamus circuit
that suppresses food intake. Nat. Comm. 11:6326.
- Xiao et al., 2021.
Orexin receptors 1 and 2 in serotonergic neurons differentially regulate
peripheral glucose metabolism in obesity. 12:5249
- Lin and Schnitzer.
2016. Genetically encoded indicators of neuronal activity. Nature
Neuroscience. 19(9): 1142.
- Kass
et al., 2013. Changes in the Neural Representation of Odorants After
Olfactory Deprivation in the Adult Mouse Olfactory Bulb Chem Senses. 38:
77–89.
- Bozza
et al., 2004. In Vivo Imaging of Neuronal Activity by Targeted Expression
of a Genetically Encoded Probe in the Mouse. Neuron. 42, 9–21.
- Li et al., 2005. Synaptic
vesicle recycling studied in transgenic mice expressing synaptopHluorin. PNAS. vol. 102 no. 17
6131–6136.
- Renauld et al., 2018. Cryo‑EM in drug discovery:
achievements, limitations and prospects. Nature Reviews 17 | JULY 2018 |
471.
- Doyle et al., 1998. The
Structure of the Potassium Channel: Molecular Basis of K+ Conduction and
Selectivity. Science. VOL. 280: 69.
- Ruso
et al., 2017. Structure of isolated Z-disks from honeybee flight muscle. J
Muscle Res Cell Motil 38:241–250.
- Adams et al., 1969. Structure
of Rhombohedral 2 Zinc Insulin Crystals. Nature. 224: 491.
- Zhang et al., 2012.
Structural basis for calmodulin as a dynamic calcium sensor. Structure.
20(5): 911–923.
Archived
Resources for Fall 2018 Class
Archived
Resources from Fall 2014 Class
- Bean B. 2007. The action potential in
mammalian central neurons. Nature Reviews 8: 451-465.
- Fundamental Physiological Recordings. Chapters
1-3; Aidley.
- Background
on Electricity. Chapters 1, 6-7; Gerrish.
- Watch Rod MacKinnon's
Nobel Lecture on Potassium Channels - Click
Here
- Talwar
and Lynch. 2014. Phosphorylation mediated structural and functional
changes in pentameric ligand-gated ion channels: Implications for drug
discovery. Int. J. Biochem. Cell Biol. 53:
218-223.
- Palma
et al., 1998. Effects of Zn2+ on wild and mutant neuronal alpha 7
nicotinic receptors. PNAS 95: 10246-10250.
- Rosenmund et al., 1998. The tetrameric structure of
a glutamate receptor channel. Science. 280: 1596-1601.
- Dixon
et al., 2014. GABA A receptor alpha and gamma subunits shape synaptic
currents via different mechanisms. J. Biol. Chem. 289: 5399-5411.
- KATP channels as
molecular sensors of cellular metabolism Nichols 440: 470-476.
- Han
et al., 1996. Indentification and properties
of an ATP-sensitive K+ current in rabbit sin-atrial node pacemaker
cells. J. Physiol. 490: 337-350.
- Gloyn et al., 2004. Activating mutations in the gene
encoding the ATP-sensitive potassium-channel subunit Kir6.2 and
permanent neonatal diabetes. New Eng J Med.
350(19): 1838-1849.
- Miki
et al., 1998. Defective insulin secretion and enhanced insulin action in
KATP channel-deficient mice. PNAS 95: 10402-10406.
- Catterall.
2000. From ionic currents to molecular mechanisms: The structure and
function of voltage-gated ion channels. Neuron 26: 13-25.
- Lacroix
et al., 2013. Molecular bases for the asynchornous
activation of sodium and potassium channels required for nerve impulse
generation. Neuron 79: 651-657.
- Marionneau et al., 2012. The sodium channel
accessory subunit NavB1 regulates neuronal excitability through
modulation of repolarizing voltage-gated K+ channels. J Neurosci 32(17): 5716-5727.
- Weiss
et al. 2011. Loss of function mutations in sodium channel naV1.7 cause
anosmia.
- Gaonzalez
et al., 2012. K+ Channels: Function-Structural Overview. Comprehensive
Physiol. 2:2087-2149.
- Hibino et al., 2010.
Inward rectifying potassium channels: Their structure, function, and
physiological roles. Phys. Reviews 90:291-366.
- Faber and Sah. 2002. Physiological role of ca-activated K
currents in the rat lateral amygdala. J Neurosci.
22(5): 1618-1628..
- Li et al., 2013.
Intracellular ATP binding is required to activate the slowly activating
K+ chanel I ks. PNAS
110(47): 18922-18927.
- Borin
et al., 2014. Inward rectifer potassium (Kir) current in dopaminergic periglomerular neurons
of the mouse olfactory bulb. 8(223): 1-15.
- Catterall, W. 2011.
Voltage-gated calcium channels. Cold Spring Harbor Perspectives Biology
- Tang et al. 2014.
Structural basis for Ca2+ selectivity of a voltage-gated calcium
channel. Nature. 505(7481): 56-61.
- Weiss et al., 2014.
Altered synaptic transmission at olfactory and vomeronasal nerve
terminals in mice lacking N-type calcium channel Cav2.2. Eur J Neurosci Sept 5 Epup ahead
of print
- DeCaen
et al., 2013. Direct recording and molecular identification of the
calcium channel of primary cilia. Nature 504(7479):315-318.
- Jentsch et al., 2002.
Molecular structure and physiological function of chloride channels.
Physiol. Rev. 82: 503-568.
- Billig
et al., 2011. Ca2+-activated Cl- currents are dispensable for olfaction.
Nature Neurosci 14(6): 763-769.
- Lin et al., 2014. A
single amino acid substitution in CFTR converts ATP to an inhibitory
ligand. J Gen Physiol. 144(4):311-320.
- Bennetts
and Parker, 2013. Molecular determinants of common gating of a CLC
chloride channel. Nature Comm. 4:2507.
- Hamill et al., 1981.
Improved patch-clamp techniques for high-resolution current recording
from cells and cell-free membrane patches. Pflugers
Arch 391: 85-100.
- Sakmann and Neher. Single
Channel Analysis, Chapter 1, A Practival Guide
to Patch-Clamping, pages 1-29.
- Sakmann and Neher. Single
Channel Analysis, Chapter 3, Guide to Data Acquisition and Analysis,
pages 53-90.
- Sakmann and Neher. Single
Channel Analysis, Chapter 18, The Principles of the Stochastic
Interpretation of Ion-Channel Mechanisms, pages 397-479.
- Sakmann and Neher. Single
Channel Analysis, Chapter 19, Fitting and Statistical Analysis of
Single-channel Records, pages 483-585.
- Fenno
et al., 2011. The development and application of optogentics.
Ann Rev Neurosci. 34: 389-412
- Tischer
and Weiner, 2014. Illuminating cell signalling
with optogenetic tools. Nature Reviews Mol Cell Biol 15: 551-558.
- Yizhar
et al., 2011. Optogenetics in neural systems. Neuron 71: 9-15.
- Jia et al., 2011.
Stimulating cardiac muscle by light: Cardiac optogenetics by cell
delivery. Circ Arrhythm Electrophysiol.
4: 753-760.
- Prigge
et al., 2012. Color-tuned channelrhodopsins
for multiwavelength optogenetics. 287: 31804-31812.
- Boada et al., 2014.
Fast-conducting mechanoreceptors contribute to withdrawal behavior in
normal and nerve injured rats. PAIN In Press
- Economo
et al., 2010. Dynamic Clamp: Alternation of response properties and
creation of virtual relalities in
neurophysiology. J. Neurosci 30(7): 2407-2413.
- Prinz and Marder. 2004.
The dynamic clamp comes of age. TRENDS In Neurosci 27(4).
- Tucker K.R. et al.,
2012. Pacemaker rate and depolarization block in nigral dopamine
neurons: A somatic sodium channel balancing act. J. Neurosci
32(42): 14519-14531.
- Workman et al., 2012.
Transient outward K current reduction prolongs action potentials and
promotes afterdepolarizations: a dynamic clamp study in human and rabbit
cardiac atrical myocyes.
J Physiol. 590.17: 4289-4305.
- Tabak et al., 2011.
Fast activating voltage- and Ca-dependent K conductance promotes
bursting in pitutary cells: a dynamic clamp
study. J Neurosci. 31(46): 16855-16863.
- Logothetis,
NK. 2008. What we can do and what we cannot do with fMRI. Nature Reviews
453: 869-879.
- Kulkarni et al.,
2012. Imaging evolutionary conserved neural networks: Preferential
activation of the oflactory system by
food-related odor. Behav Brain Res 230:
201-207.
- Sun et al., 2014. The
neural signature of satiation is associated with ghrelin response and
triglyceride metabolism. Phys and Beh pub
before press
- Li et al., 2014.
Complex relationship between BOLD-fMRI and electrophysiological signals
in different olfactory bulb layers. Neuroimage 95: 29-38.
- Kang et al., 2013.
Breaking the barriers in membrane protein crystallograph.
International J of Bioch Cell Biol 25:
636-644.
- Long et al., 2005.
Crystal structure of a mammalian voltage-dependent Shaker family
K+ channel. Science 309: 897.
- Sauguet
et al., 2014. Crystal structures of a pentameric ligand-gated ion
channel provide a mechanism for activation. PNAS 111(3): 966-971.
- Kvist
et al., 2013. Crystal structure and pharmacological characterization of
a novel NMDA receptor antagonist at the GluN1 glycine binding site. J
Biol. Chem. 288: 33124-33135.
- Long and Lee.
2012. Intracellular recording in behaving animals. Curr
Opin in Neurobiol.
22: 34-44.
- Khodagholy et al., 2013. In vivo recordings of brain
activity using organie transistors. Nature
Communications. 4: 1575.
- Fukunaga et al.,
2014. Independent control of gamma and theta activity by distinct
interneuron networks in the olfactory bulb. Nature Neurosci
17(9): 1208.
- INSERT Zhenbo's Selection Here
Archived
Resources from Fall 2011
- Catterall W.A.
2000. From ionic currents to molecular mechanisms: The structure and
function of voltage-gated sodium channels. Neuron 26: 13-25.
- Volkers
et al., 2011. Nav1.1 dysfunction in genetic epilepsy with febrile
seizures-plus or Dravet syndrome. Eur J Neurosci epup ahead of
print: 1-8.
- He and Soderlund. 2010. Human embryonic kidney (HEK293)
cells express endogenous voltage-gated sodium currentsand
Nav1.7 sodium channels. 469: 268-272.
- Rowe et al. Isolation
and characterization of CvIV4: A pain inducing alpha-scorpion toxin. PLoS One 6(8): e23520.
- Weiss et al., 2011.
Loss-of-function mutations in sodium channel Nav1.7 cause anosmia.
Nature 472: 186-192. - Commentary
on the Nature article
- Choe, S. Potassium
channel structures. Nature Reviews 3: 115-121.
- Yamamoto et al., 2011.
Suppression of a neocortical potassium channel activity byintracellular amyloid B and its rescue with
Homer1a. J. Neurosci. 31(31): 11100-11109.
- Choi et al., 2011. K+
channel mutations in adrenal aldosterone-producing adenomas and
hereditary hypertention. Science 331: 768-772.
- Mirkovic
and Wickman, 2011. Identification and characterization of alternative
splice variants of the mouse Trek2/Kcnk10 gene. Neurosci.
e pub ahead of press.
- Billig
et al., 2011. Ca2+-activated Cl- currents are dispensable for olfaction.
Nature Neurosci 14(6): 763-771.
- Dutzler
et al., 2003. Gating the selectivity filter in ClC
chloride channels. Science 300: 108-112.
- Valdivieso
et al. Measurement of cystic fibrosis transmembrane conductance
regulator activity using fluorescence spectrophotometry. Anal Biochem 418: 231-237.
- Suzuki et al.,
2006. Diversity of Cl- channels. Cell Mol Life Scie
63: 12-24.
- Jentsch et al.
2002. Molecular Structure and physiological function of chloride
channels. Physiol Review 82: 503-568. USE AS
ADDITIONAL RESOURCE; VERY DETAILED.
- Makino et al., 2011.
Enhanced synaptic plasticity in mice with phosphomimetic
mutation of the GluA1 AMPA receptor. PNAS 108(20): 8450-8455.
- Kelly et al., 2009.
Synaptic mGluR activation drives plasticity of
calcium-permeable AMPA receptors. Nature Neurosci.
12(5): 593-601.
- Karakas et al., 2011.
Subunit arrangement and phenylethanolamine
biding in GluNa/GluN2B NMDA receptors. Nature
475: 249-254.
- Chaudhry et al., 2009.
Energetics of glutamate receptor ligand binding domain dimer assembly
are modulated by allosteric ions. PNAS 106(30): 12329-12334.
- Baenziger
et al., 2011. 3D structure and allosteric modulation of the
transmembrane domain of pentameric ligand-gated ion channels. Neuropharm 60: 116-125.
- Kim et al., 2011.
Requirement of calcium-activated chloride channels in the activation of
mouse vomeronasal neurons. Nature DOI: 10.1038, 7 pages.
- Riccio et al., 2009.
Essential role for TRPC5 in amygdala function and fear-related behavior.
Cell 137: 761-772.
- Liu et al. 2007. In
vivo identification and manipulation of the Ca2+ selectivity filter in
the drosophila transient receptor potential channel. J. Neurosci. 27(3): 604-615.
- Montell,
C. 2001. Physiology, phylogeny, and functions of the TRP superfamily of
cation channels. Science STKE. 17 pages.
- Hendrich et al., 2008.
Pharmacological disruption of calcium channel trafficking by the
alpha2delta ligand gabapentin. PNAS 105(9): 3628-3633.
- Fuller et al., 2010. Molecular
mechanism of calcium channel regulation in the fight-or-flight response.
Science Signaling 3(141): ra70, 9 pages.
- Condliffe
et al., 2010. Endogenous SNAP-25 regulates native voltage-gated calcium
channels in glutamatergic neurons. J. Biol. Chem. 285(32): 24968-24976.
- Catterall, W.A. 2011.
Voltage-gated calcium channels. Cold Spring Harbor Perspect
Biol. 3: a003947, 24 pages.
- Hamill et al., 1981.
Improved patch-clamp techniques for high-resolution current recording
from cells and cell-free membrane patches. Pflugers
Arch 391: 85-100.
- Sarkisov
and Wang. Combining uncaging techniques with patch-clamp recording and
optical physiology. Neuroscience Methods 38: 149-201.
- Callaway and Yuste. 2002. Stimulating neurons with light. Cur Opin Neurobiol 12:
587-592.
- Harvey and Svoboda.
2007. Locally dynamic synaptic learning rules in pyramidal neuron
dendrites. Nature 450(20): 1195-1202.
- Witten et al., 2010.
Cholinergic interneurons control local circuit activity and cocaine
conditioning. Science 330: 1677-1681.
- Kravitz et al.,
2010. Regulation of parkinsonian motor behaviors by optogentic
control of basal ganglia circuitry. Nature 466: 622-629.
- Sakmann and Neher. Single
Channel Analysis, Chapter 1, A Practival Guide
to Patch-Clamping, pages 1-29.
- Sakmann and Neher. Single
Channel Analysis, Chapter 3, Guide to Data Acquisition and Analysis,
pages 53-90.
- Sakmann and Neher. Single
Channel Analysis, Chapter 18, The Principles of the Stochastic
Interpretation of Ion-Channel Mechanisms, pages 397-479.
- Sakmann and Neher. Single
Channel Analysis, Chapter 19, Fitting and Statistical Analysis of
Single-channel Records, pages 483-585.
- Kralik,
et al., 2001. Techniques for long-term multisite neuronal ensemble
recordings in behaving animals. METHODS 25: 121-150.
- Ding et al., 2011.
Cortical excitation and inhibition following focal traumatic brain
injury. J Neurosci 31(40): 14-85-14094.
- Roitman
et al., 2005. Nucleus accumbens neurons are
innately tuned for rewarding and aversive taste stimuli, encode their
predators, and are linked to motor output. Neuron 45: 587-597.
- Kravitz et al., 2010. Mordel et al., 2011. Activation of glycine receptor
phase-shirts the ciracadian rhythm in neuronal
activity in the mouse suprachiasmatic nucleus. J Physiol
589.9: 2287-2300.
- Robinson et al.,
2003. Detecting subsecond dopamine release
with fast-scan cyclic voltammetry in vivo. Clin Chem 49(10): 1763-1773.
- Fulton et al., 2011. Contribution
of Kv1.2 voltage-gated potassium channel to D2 autoreceptor
regulation of axonal dopamine overflow. JBC 286(11): 9360-9372.
- Garret et al., 2008.
Reward-predictive cues enhance excitatory synaptic strength onto
midbrain dopamine neurons. Science 321: 1690-1694.
- Bender et al., 2010.
Dopaminergic modulation of axon initial segment calcium channels
regulates action potential initiation. Neuron 68: 500-511.
- Whole-cell
recording in vivo. 2007. Neurophysiology Supplement 38 Current Protocols
in Neuroscience. ed. John Wiley and Sons 6.22.1-6.22.15.
- Poo and
Isaacson. 2011. A major role for intrcortical
circuits in the strength and tuning of odor-evoked excitation in
olfactory cortex. Neuron 72: 41-48.
- Yartsev et al., 2011. Grid cells without theta
oscillations in the entorhinal cortex of bats. Nature 479: 103-107.
- Kopp-Scheinpflug et al., 2003. Decreased temporal
precision of auditory signaling in KCNA1-null mice: an
electrophysiological study in vivo. J Neurosci.
23(27): 9199-9207.
- Opella
et al., 1999. Structures of the M2 channel-lining segments from
nicotinic acetylcholine and NMDA receptors by NMR. Nature Struct Biol
6(4): 374-379.
- Li et al., 2007.
Solid-state NMR characterization of conformational plasticity within the
transmembrane domain of the influenza A M2 proton channel. Biochimica Biophysica Acta
1768: 3162-3170
- Osawa
et al., 2009. Evidence for the direct interaction of spermine with the
inwardly rectifying potassium channel. J Biol Chem 284(38): 26117-26126.
- Opella
et al., 2002. Structure determination of membrane proteins by NMR
spectroscopy. Biochem Cell Biol 80: 597-604.
Archived
Resources from Fall 2007
- Catterall et
al., 2005. Nominclature and Structure-Function
Relationships of Voltage-Gated Sodium Channels.Pharm
Reviews 57(4): 397-409.
- Bendahhou
et al., 2007. Role of hydrophobic residues in the voltage sensors of the
voltage-gated sodium channel. BBA 1768: 1440-1447.
- Li and Tomaselli.
2004. Using the deadly u-conotoxins as probes of voltage-gated sodium
channels. Toxicon. 44: 117-122.
- Malik et al., 2006.
Regulation of epithelial sodium channels by the ubiquitin-proteasome
proteolytic pathway. Am J Physiol. Renal Physiol. 290: F1285-F1294.
- Sands and Sansom.
2007. How does a voltage sensor interact with a lipid bilayer?
Simulations of a potassium channel domain. Structure 15: 235-244.
- Oliva et al. 2005.
Slow inactivation in voltage gated potassium channels is insesitive to the binding of pore occluding peptide
toxins. Biophys. J.89: 1009-1019.0
- Kurata
and Fedida, 2005. A structural interpretation
of voltage-gated potassium channel inactivation. Prog. Biophys. & Mol. Biol. 92: 185-208.
- Long et al., 2005.
Crystal structure of a mammalian voltage-dependent Shaker family
K+>channel. Science. 309: 897-903.
- Kleene, S and R. Gestleland. 1991. Calcium-activated chloride
conductance in frog olfactory cilia. J. Neurophysiol.
11(11): 3624-3629.
- Yin et al., 2007.
Characterization of a novel voltage-dependent outwardly rectifying anion
current in Caenorhabditis elegans oocytes. Am J Physiol. Cell
Physiol. 292: C269-C277.
- Bennetts
et al., 2007. Inhibition of skeletal muscle CLC-1 chloride channels by
low intracellular pH and ATP. J Biol. Chem. Published online 10 August.
- Suzuki et al., 2006.
Review: Diversity of Cl- Channels. Cell. Mol. Life Sci. 63: 12-24.
- Grutter et al.,
2005. Molecular tuning of fast gating in pentameic
ligand-gated ion channels. PNAS 102(50): 18207-18212.
- Rosenmund
et al., 1998. The tetrameric structure of a glutamate receptor channel.
Science 280: 1596-1599.
- Roberts and Evans.
2007. Cysteine substitution mutants give structural insight and identify
ATP binding and activation sites at P2X receptors. J. Neurosci. 27(15): 4072-4082.
- Craven and Zagotta. 2006. REVIEW: CNG and HCN Channels: Two
Peas, One Pod. Annual Rev. Physiol. 68: 375-401.
- Lucas et al. 2003. A
diacylglycerol-gated cation channel in vomeronasal neuron dendrites is
impaired in TRPC2 mutant mice: mechanism of pheromone transduction.
Neuron 40:551-561.
- Nache
et al., 2005. Activation of olfactory-type cyclic nucleotide-gated
channels is highly cooperative. J Physiol. 569.1: 91-102.
- Hamada et al., 2003.
Three-dimensional rearrangements within inositol 1,4,5-trisphosphate
receptor by calcium. J Biol. Chem. 278(52): 52881-52889.
- Ion channels
for communication between and within cells. Nobel Lecture, December
1991.
- Elementary
steps in synaptic transmission revealed by current through single ion
channels. Nobel Lecture, December 1992.
- Improved
patch-clamp techniques for high-resolution current recordings from cells
and cell-free membrane patches. Pflugers Arch
391(2): 85-100.
- Webster et al.
2006. Amyloid peptides mediate hypoxic increase of L-type Ca2+ channels
in central neurones. Neurbiol
of Aging 27: 439-445.
- Wahl-Schott et
al., 2006. Switching off calcium-dependent inactivation in L-type
calcium channels by an autoinhibitory domain. PNAS 103(42): 15657-15662.
- Yaari et al., 2007. Recruitment of apical dendritic
T-type Ca2+ channels by backpropagating spikes underlies de novo
intrinsic bursting in hippocampal epileptogenesis.
J. Physiol. 580.2: 435-450.
- Hogan Q. H. 2007.
Role of decreased sensory neuron membrane calcium currents in the
genesis of neuropathic pain. Croat Med J. 48: 9-21.
- Riera et al., 2007. Artificial sweeteners and salts
producing a metallic taste sensation activate TRPV1 receptors. Am J
Physiol. REgul. Integr.
Comp. Physiol. 293: R626-R634.
- McGann et al.,
2005. Odorant representations are modulated by intra- but not
interglomerular presynaptic inhibition of olfactory sensory neurons.
Neuron 48: 1039-1053.
- Lowe G. 2003.
Flash photolysis reveals a diversity of ionotrophic
glutamate receptors on the mitral cell somatodendritic
membrane. J. Neurophysiol. 90: 1737-1746.
- Zochowski et al., 2000. Concepts in Imaging and
Microscopy: Imaging membrane potential with voltage-sensitive dyes.
Biol. Bull. 198: 1-21.
- Oka et al.,
1999. A new planar multielectrode array for extracellular recording:
application to hippocampal acute slice. J. Neurosci.
Methods. 93: 61-67.
- Egert et al. 1998. A novel organotypic long-term
culture of the rat hippocampus on substrate-integrated multielectrode
arrays. Brain Res. Protocols 2: 229-242.
- Granados-Fuentes
et al., 2004. Olfactory bulb neurons express functional, entrainable, circadians
rhythms. Eur. J. Neurosci. 19: 898-906.
- Dobbins et
al., 2007. Chronically recording with a multi-electrode array devide in the auditory cortex of an awake ferret. J.
Neurosci. Met. 161: 101-111.
- Hochberg et
al., 2006. Neuronal ensemble control of prosthetic devices by a human with
tetraplegia. Nature 442: 164-171.
- Starace
and Bezanilla. 2001. Histidine scanning
mutagenesis of basic residues of the S4 segment of the Shaker K+
channel. J Gen. Physiol. 117: 469-490.
- Mori and Ito. 2001. An
essential amino acid residue in the protein translocation channel
revealed by targeted random mutageneiss of SecY. PNAS 98(9): 5128-5133. .
- Mansour et al. 1997.
Key residues defining the u-Opiod receptor
binding pocket: a site-directed mutagenesis study. J. Neurochem. 68: 344-353.
- Beene
et al., 2003. Unnatural amino acid mutagenesis in mapping ion channel
function. Cur. Opin. Neurobiol.
13: 264-270.
- Berggard
et al., 2007. Methods for the detection and analysis of protein-protein
interactions. Proteomics 7: 2833-2842.
- Shoemaker and Panchendo. 2007. Deciphering protein-protein
interactions. Part II. Computational methods to predict protein and
domain interaction partners. PLoS
Computational Biology 3(4): 595-
- Borisenko
et al., 2003. Simultaneous optical and electrical recording of single
gramicidin channels. Biophysical J 84: 612-622.
- Piston and Kremers. 2007. Fluorescent Protein FRET: the good,
the bad, and the ugly. TRENDS in Biochemical Sciences 32(9): 407-414.
- Jin et al., 2003. Structural basis for partial
agonist action at ionotrophic glutamate
receptors. Nature Neurosci. 6(8): 803 - 810.
- Swartz, KJ.
2004. Towards a structural view of gating in potassium channels. Nature Neurosci. 5: 905-916.
- Moretti et
al., 2004. Model structures of the N-methyl-D-aspartate receptor subunit
NR1 explain the molecular recognition of agonist and antagonist ligands.
J. Struct. Biol. 145: 205- 215.
- Furukawa et
al., 2005. Subunit arrangement and function in NMDA receptors. Nature.
428: 185-192.
Archived
Resources from Fall 2005 Class
- Waxman et al.,
2004. Na Channel expression along axons in multiple sclerosis and its
models. TRENDS Pharm. Sci. 25(11): 584-591.
- Chang et al., 2004. A
novel SCN5A mutation manifests as a maligant
form of long QT syndrome with perinatal onset of
tachycardia/bradycardia. Cardiovas. Research
64: 268-278.
- Zhao et al., 2004. A
gating hinge in Na+ channels: A molecular switch for electrical
signaling. Neuron. 41: 859-865.
- Gandhi et al., 2003.
The orientation and molecular movement of a K+ channel voltage-sensing
domain. Neuron 40: 515-525.
- Doyle et al., 1998.
The structure of the potassium channel: Molecular basis of K+ conduction
and selectivity. Science 280: 69-77.
- Aggarwal and
MacKinnon, 1996. Contribution of the S4 segment to gating charge in the
Shaker K+ channel. Neuron 16: 1169-1177.
- Dutzler
et al., Gating the selectivity filter in CLC chloride channels. Science
300: 108-113.
- Maduke
et al., 2000. A decade of CLC Chloride channels: Structure, mechanism,
and many unsettled questions. Annu. Rev. Biophys. Biomol. Struct.
- Perez-COrnego. 2004. Regulation of Ca2+-activated chloride
channels by cAMP and CFTR in parotid acinar cells. BBRC 316: 612-617.
- Pusch,
M. 2004. Structural insights into chloride and proton-mediated gating of
CLC chloride channels. Biochemistry. 43(5): 1135-1145
- Unwin, N. 2003.
Structure and action of the nicotinic acetylcholine receptor explored by
electron microscopy. FEBS Letters 555: 91-95.
- Gally
et al., 2004. A transmembrane protein required for acetylcholine
receptor clustering in Caenorhabditis elegans
- Gotti
and Clementi. 2004. Neuronal nicotinic receptors: from structure to
pathology. Prog. in Neurobiol. 74: 363-396.
- Cormier et al., 2004.
Long-term exposure to nicotine modulates the level and activity of
acetylcholine receptors in white blood cells of smokers and model mice.
Mol. Pharmacol. 66: 1712-1718.
- Matulef
and Zagotta. 2003. Cyclic nucleotide-gated ion
channels. Annu. Rev. Cell Dev. Biol.19: 23-44.
- Zheng and Zagotta. 2004. Stoichiometry and assembly of
olfactory cyclic nucleotide-gated channels.Neuron.
42: 411-421.
- Krajewski
et al. 2003. Tyrosine phosphorylation of rod cyclic nucleotide-gated
channels switches off Ca2+ calmodulin inhibition. J. Neurosci.
23(31): 10100-10106.
- Brady et al., 2004.
Functional role of lipid raft microdomains in cyclic nucleotide-gated
channel activation. Mol. Pharmacol. 65(3):
503-511.
- Catterall. 2000.
Structure and regulation of voltage-gated Ca2+ channels. Annu. Rev. Cell Dev.>Biol. 16: 521-555.
- McGee et al. 2004.
Calcium channel function regulated by the SH3-GK module in Beta
Subunits. Neuron. 42: 89-99.
- Cibulsky
and Sather. 2003. Control of ion conduction in L-type Ca2+ channels by
the concerted action of S5-6 regions. Biophys.
J. 84: 1709-1719.
- Kim et al., 2004.
Identification of the components controlling inactivation of
voltage-gated Ca2+ channels. Neuron. 41: 745-754.
- Ion channels
for communication between and within cells. Nobel Lecture, December
1991.
- Elementary
steps in synaptic transmission revealed by current through single ion
channels. Nobel Lecture, December 1992.
- Improved
patch-clamp techniques for high-resolution current recordings from cells
and cell-free membrane patches. Pflugers Arch
391(2): 85-100.
- Tertyshnikova
and Fein. 1998. Inhibition of inositol 1,4,5-trisphosphate-induced Ca2+
release by cAMP-dependent protein kinase in a living cell. PNAS 95:
1613-1617.
- Eerbeek
et al., 2004. Ratiometric intracellular
calcium imaging in the isolated beating rat heart using indo-1
fluorescence. J Applied Physiol. 97: 2042-2050.
- Takahashi et al.,
1999. Measurement of intracellular calcium. Physiol. Reviews 79 (4):
1089-1125.
- Segev
et al., 2004. Recording spikes from a large fraction of the ganglion
cells in a retinal patch. Nature Neuroscience. 7(10): 1155-1162.
- Christensen et al.,
2000. Multi-unit recordings reveal context-dependent modulation of
synchrony in odor-specific neuroal ensembles.
Nature Neuroscience 3(9): 927-931.
- Rennaker
et al., 2005. An economical multi-channel cortical electrode array for
extended periods of recording during behavior. 142: 97-105.
- Oberleithner
et al., 1997. Structural activity of a cloned potassium channel (ROMK1)
monitored with the atomic force microscope: The
"molecular-sandwich" technique. PNAS 94: 14144-14149.
- Jena et al., 2003.
Structure and composition of the fusion pore. Biophysical Journal 84:
1337-1343.
- Garavaglia
et al., 2004. Membrane thickness changes ion-selectivity of
channel-proteins. Cell Physiol. Biochem. 14:
231-240. Edwardson adn Henderson. 2004. Atomic
force microscopy and drug discovery. DDT 9(2): 64-71.
- Jiang et al., 2003.
X-ray structure of a voltage-dependent K+ channel. Nature 423: 33-41.
- Hubbard, S.R. 1997.
Crystal structure of the activated insulin receptor tyrosine kinase in
complex with peptide substrate and ATP analog. EMBO J. 16(18):
5573-5581.
- Betzel
et al., 2001. Structure of a serine protease proteinase K from Tritirachium album limber at 0.98 Angstrom
Resolution. Biochemistry 40: 3080-3088.