2006 Publications, FSU Biological Science

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Anderson, L. C. 2006. The genus Arnoglossum (Asteraceae). In Flora of North America 20:622-625. [*, A3]

Anderson, L. C. 2006. Ericameria nauseosa subsp. ammophila (Asteraceae), a new rabbitbrush from the San Luis Valley of Colorado. Sida 22:868. [*, A3]

Beerli, P. 2006. Comparison of Bayesian and maximum likelihood inference of population genetic parameters. Bioinformatics 22:341–345. [*, A3]

Beerli, P. 2006. Book review: Statistical Methods in (Molecular) Evolution. Evolution 60:421–423. [bookrev, A3]

Bertram, R., J. Tabak, N. Toporikova, and M. E. Freeman. 2006. Endothelin action on pituitary lactotrophs: one receptor, many GTP-binding proteins. Science STKE, 2006, Issue 319, pp. pe4, 24 January 2006 [DOI: 10.1126/stke.3192006pe4]. [*, A2]

Blakemore, L. J., C. W. Levenson, and P. Q. Trombley. 2006. Neuropeptide Y modulates excitatory synaptic transmission in the olfactory bulb. Neuroscience 138:663–674. [*, A2]

Blakemore, L. J., M. Resasco, M. A. Mercado, and P. Q. Trombley. 2006. Evidence for calcium-permeable AMPA receptors in the olfactory bulb. American Journal of Physiology Cell Physiology 290:C925–C935. [*, A2]

Boggs, C. L., C. E. Holdren, I. G. Kulahci, T. C. Bonebrake, B. D. Inouye, J. P. Fay, A. McMillan, E. H. Williams, and P. R. Ehrlich. 2006. Delayed population explosion of an introduced butterfly. Journal of Animal Ecology 75:466–475. [*, A3]

Budil, D. E., K. L. Sale, K. A. Khairy, and P. G. Fajer. 2006. Calculating slow-motional electron paramagnetic resonance spectra from molecular dynamics using a diffusion operator approach. Journal of Physical Chemistry A 110:3703-3713. [*, A4]

Burns, J. H., and A. A. Winn. 2006. A comparison of plastic responses to competition by invasive and non-invasive congeners in the Commelinaceae. Biological Invasions 8:797-807. [*, A3]

Cason, A. M., M. DenBleyker, K. Ferrence, J. C. Smith, and T. A. Houpt. 2006. Sex and estrous cycle differences in the behavioral effects of high-strength static magnetic fields: role of ovarian steroids. American Journal of Physiology-Regulatory Integrative and Comparative Physiology 290: R659-R667. [*, A2]

Clarke, J. A., C. P. Tambussi, J. I. Noriega, G. M. Erickson, and R. A. Ketcham. 2006. Corrigendum: definitive fossil evidence for the extant avian radiation in the Cretaceous. Nature 444:780. [*, A3]

Day, T., D. Houle, and L. Rowe. 2006. Debating sexual selection and mating strategies. Science 312:691–691. [lett, A3]

Egli, M., R. Bertram, R., N. Toporikova, M. T. Sellix, W. Blanco, and M. E. Freeman. 2006. Prolactin secretory rhythm of mated rats induced by a single injection of oxytocin. American Journal of Physiology: Endocrinology and Metabolism 290:E566-E572. [*, A2]

Erickson, G. M. 2002, 2003, 2005, 2006, 2007. Paleobiology of Dinosaurs (Lecture Manual). Hayden McNeil Press. Plymouth, MI. 120 pp. [bookau, A3]

Erickson, J. R., and T. S. Moerland. 2006. Functional characterization of parvalbumin from the Arctic cod (Boreogadus saida): Similarity in calcium affinity among parvalbumins from polar teleosts. Comparative Biochemistry and Physiology A-Molecular & Integrative Physiology 143:228-233. [*, A4]

Fadool, J. M., and J. E. Dowling. 2006. Genetic analysis of retinal development and function in zebrafish. Pages 342–370 in E. Sernagor, S. Eglen, W. Harris, and R. O. Wong (eds.). Retinal Development. Cambridge University Press, Cambridge, U.K. [chap, inv, A1, A2]

Freestone, A. L., and B. D. Inouye. 2006. Dispersal limitation and environmental heterogeneity shape scale-dependent diversity patterns in plant communities. Ecology 87:2425–2432. [*, A3]

Gaitros, D., W. Zhang, A. Mast, and G. Riccardi. 2006. A bioinformatics semantic association annotation tool. In Proceedings of the International Conference on Internet Computing, Las Vegas, NV, June 26–29, 2006. [*, A3]

Gray, S., T. E. Miller, N. Mouquet, and T. Daufresne. 2006. Nutrient limitation in detritus-based microcosms. Hydrobiologia 573:173–181. [*, A3]

Gutmann, A. K., B. Jacobi, M. T. Butcher, and J. E. A. Bertram. 2006. Constrained optimization in human running. Journal of Experimental Biology 209:622-632. [*, undergrad]

Haight, K. L. 2006. Defensiveness of the fire ant, Solenopsis invicta, is increased during colony rafting. Insectes Sociaux 53:32-36. [*, stud-wrt, A3]

Halpern, S., and N. Underwood. 2006. Approaches for testing herbivore effects on plant population dynamics. Journal of Applied Ecology 43:922–929. [*, A3]

Hoffman, G. G., S. Sona, M. Bertin, and W. R. Ellington. 2006. The role of an absolutely conserved tryptophan residue in octamer formation and stability in mitochondrial creatine kinases. Biochimica et Biophysica Acta—Proteins and Proteomics 1764:1512–1517. [*, A1]

Huang, L., P. Manandhar, K.-E. Byun, P. B. Chase, and S Hong. 2006. Selective assembly and alignment of actin filaments with desired polarity on solid substrates. Langmuir 22:8635–8638. [*, A1]

Inouye, B. D., N. Underwood, D. F. Doak, and P. Kareiva. 2006. Interviewing for academic jobs. Bulletin of the Ecological Society of America 87:155–158. [*, A3]

Khairy, K., D. Budil, and P. Fajer. 2006. Nonlinear-least-squares analysis of slow motional regime EPR spectra. Journal of Magnetic Resonance 183:152–159. [*, A1]

King, J. R., and W. R. Tschinkel. 2006. Experimental evidence that the introduced fire ant, Solenopsis invicta, does not competitively suppress co-occurring ants in a disturbed habitat. Journal of Animal Ecology 75:1370–1378. [*, A3]

Kondrashov, T. A., B. Hollis, D. Houle, and A. S. Kondrashov. 2006. Loss of function alleles of gene garnet appear to be lethal. Drosophila Information Service 89:12–13. [A3]

Lawrence, C..J., T. E. Seigfried, H. W. Bass, and L. K. Anderson. 2006. Predicting chromosomal locations of genetically mapped loci in maize using the Morgan2McClintock translator. Genetics 173:2007–2009. [*, A1]

Levitan, D. R., and D. L. Ferrell. 2006. Selection on gamete recognition proteins depends on sex, density, and genotype frequency. Science 312:267-269. [*, A3]

Li, H. C., L. K. Song, B. Salzameda, C. R. Cremo, and P. G. Fajer. 2006. Regulatory and catalytic domain dynamics of smooth muscle myosin filaments. Biochemistry 45:6212-6221. [*, A4]

Liu, J., D. W. Taylor, E. Krementsova, K. Trybus, and K. A. Taylor. 2006. Three-dimensional structure of the myosin V inhibited state by cryoelectron tomography. Nature 442:208-211. [*, A4]

Liu, J., S. Wu, M. C. Reedy, H. Winkler, C. Lucaveche, Y. Cheng, M. K. Reedy, and K. A. Taylor. 2006. Electron tomography of swollen rigor fibers of insect flight muscle reveals a short and variably angled S2 domain. Journal of Molecular Biology 362:844–860. [*, A]

Lopez, J. A., J. A. Ryburn, O. and Fedrigo, G. J. P. Naylor. 2006. Phylogeny of sharks of the family Triakidae (Carcharhiniformes) and its implications for the evolution of carcharhiniform placental viviparity. Molecular Phylogenetics and Evolution 40:50–60. [*, A3]

Mast, A. R., S. Kelso, and E. Conti. 2006. Are any primroses (Primula) primitively monomorphic? New Phytologist 171:605–616. [*, A3]

Moore, P. L., E. T. Crooks, L. Porter, P. Zhu, C. S. Cayanan, H. Grisé, P. Corcoran, M. B. Swick, M. Granti, L. Morris, K. H. Roux, D. R. Burton, and J. M. Binley. 2006. Nature of nonfunctional envelope proteins on the surface of human immunodeficiency virus type 1. Journal of Virology 80:2515-2528. [*, A1]

Mouquet, N., T. E. Miller, T. Daufresne, and J. M. Kneitel. 2006. Consequences of varying regional heterogeneity in source-sink metacommunities. Oikos 113:481-488.[*, A3]

Munguia, P., G. Guzman, and F. Ramirez-Guillen. 2006. Seasonal community structure of macromycetes in Veracruz, Mexico. Ecography 29:57-65. [*, stud-tem, A3]

Nelson, H. B., and H. L. Tang. 2006. Effect of cell growth on hepatitis C virus (HCV) replication and a mechanism of cell confluence-based inhibition of HCV RNA and protein expression. Journal of Virology 80:1181-1190. [*, A1]

Nesbitt, S. J., A. H. Turner, M. A. Norell, and G. M. Erickson. 2006. Prey choice and cannibalistic behaviour in the theropod Coelophysis. Biology Letters (The Royal Society, London) 2:611–614. [*, A3]

Palis, J. G., M. J. Aresco, and S. Kilpatrick. 2006. Breeding biology of a Florida population of Ambystoma cingulatum (flatwoods salamander) during a drought. Southeastern Naturalist 5:1-8. [*, stud-fcj, A3]

Pélabon, C., T. F. Hansen, A. J. R. Carter, and D. Houle. 2006. Response of fluctuating and directional asymmetry to selection on wing shape in Drosophila melanogaster. Journal of Evolutionary Biology 19:764–776. [*, A3]

Poulton, J. S., and W.-M. Deng. 2006. Dystroglycan down-regulation links EGF receptor signaling and anterior-posterior polarity formation in the Drosophila oocyte. Proceedings of the National Academy of Sciences of the USA 103L12775–12780. [*, A1]

Prasad, A. K. S. K., and J. A. Nienow. 2006. The centric diatom genus Cyclotella, (Stephanodiscaceae : Bacillariophyta) from Florida Bay, USA, with special reference to Cyclotella choctawhatcheeana and Cyclotella desikacharyi, a new marine species related to the Cyclotella striata complex. Phycologia 45:127-140. [*, postdoc-rjl, A3]

Prieto-Marquez, A., D. B. Weishampel, and J. R. Horner. 2006. The dinosaur Hadrosaurus foulkii, from the Campanian of the East Coast of North America, with a reevaluation of the genus. Acta Palaeontologica Polonica 51:77-98. [*, stud-gme, A3]

Richardson, J. M. L., M. S. Gunzburger, and J. Travis. 2006. Variation in predation pressure as a mechanism underlying differences in numerical abundance between populations of the poeciliid fish Heterandria formosa. Oecologia 147:596-605. [*, A3]

Ronquist, F., B. Larget, J. P. Huelsenbeck, J. B. Kadane, D. Simon, and P. 2006. Comment on "Phylogenetic MCMC algorithms are misleading on mixtures of trees." Science 312:doi:10.1126/science.1123622. [edmat, A3]

Schneider, M., A. A. Khalil, J. Poulton, C. Castillejo-Lopez, D. Egger-Adam, A. Wodarz, W.-M. Deng, and S. Baumgartner. 2006. Perlecan and Dystroglycan act at the basal side of the Drosophila follicular epithelium to maintain epithelial organization. Development 133:3805–3815. [*, A1]

Schoffstall, B., N. M. Brunet, F. Wang, S. Williams, A. T. Barnes, V. F. Miller, L. A. Compton, L. A. McFadden, D. W. Taylor, R. Dhanarajan, M. Seavy, and P. B. Chase. 2006. Ca²⁺-sensitivity of regulated cardiac thin filament sliding does not depend on myosin isoform. Journal of Physiology 577:935–944. [*, A1]

Schoffstall, B., A. Clark, and P. B. Chase. 2006. Positive inotropic effects of low dATP/ATP ratios on mechanics and kinetics of porcine cardiac muscle. Biophysical Journal 91:2216–2226. [*, A1]

Sellix, M. T., M. Egli, M. O. Poletini, D. T. McKee, M. D. Bosworth, C. A. Fitch, .and M. E. Freeman. 2006. Anatomical and functional characterization of circadian clock gene expression in neuroendocrine dopaminergic neurons. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology. 290:R1309-R1323. [*, A2]

Sen, K. I., A. Sienkiewicz, J. F. Love, J. C. vanderSpek, P. G. Fajer, and T. M. Logan. 2006. Mn(II) binding by the anthracis repressor from Bacillus anthracis. Biochemistry 45:4295-4303. [*, A4]

Smirnova, T. I., T. G. Chadwick, R. MacArthur, O. Poluektov, L. Song, M. M. Ryan, G. Schaaf, and V. A. . 2006. The chemistry of phospholipid binding by the Saccharomyces cerevisiae phosphatidylinositol transfer protein Sec14p as determined by EPR spectroscopy. Journal of Biological Chemistry 281:34897-34908. [*, stud-PGF, A1]

Smith, C. R., and W. R. Tschinkel. 2006. The sociometry and sociogenesis of reproduction in the Florida harvester ant (Pogonomyrmex badius). Journal of Insect Science 6:32. [*, A3]

Steen, D. A., M. J. Aresco, S. G. Beilke, B. W. Compton, E. P. Condon, C. K. Dodd, H. Forrester, J. W. Gibbons, J. L. Greene, G. Johnson, T. A. Langen, M. J. Oldham, D. N. Oxier, R. A. Saumure, F. W. Schueler, J. M. Sleeman, L. L. Smith, J. K. Tucker, and J. P. Gibbs. 2006. Relative vulnerability of female turtles to road mortality. Animal Conservation 9:269-273. [*, stud-fcj, A3]

Tang, H. 2006. Proteomics in human-pathogen interactions. Pages [page needed] in D. Ganten and K. Ruckpaul (eds.). Encyclopedic Reference of Genomics and Proteomics in Molecular Medicine. Springer, Berlin, New York. [chap, A1]

Tawde, P., Y. P. Venkatesh, F. Wang, S. S. Teuber, S. K. Sathe, and K. H. Roux. 2006. Cloning and characterization of profilin (Pru du 4), a cross-reactive almond (Prunus dulcis) allergen. Journal of Allergy and Clinical Immunology 118:915–922. [*, A1]

Taylor, K. A., J. Liu, and H. Winkler. 2006. Localization and classification of repetitive structures in electron tomograms of paracrystalline assemblies. Pages 417–439 in J. Frank (ed.). Electron Tomography: Methods for Three-dimensional Visualization of Structures in the Cell, 2nd edition. Springer-Verlag, New York. [chap, A1]

Tiffin, P., B. D. Inouye, and N. Underwood. 2006. Induction and herbivore mobility affect the evolutionary escalation of plant defence. Evolutionary Ecology Research 8:265-277. [*, A3]

Travis, J. 2006. Is it what we know or who we know? Choice of organism and robustness of inference in ecology and evolutionary biology. American Naturalist 167:303-314. [edmat, A3]

Tschinkel, W.R. 2006. The Fire Ants. Belknap/Harvard University Press, Cambridge, MA. 747 pp. [bookau, A3]

Uda, K., N. Fujimoto, Y. Akiyama, K. Mizuta, K. Tanaka, W. R. Ellington, and T. Suzuki. 2006. Evolution of the arginine kinase gene family. Comparative Biochemistry and Physiology D-Genomics & Proteomics 1:209-218. [*, A4]

Urbatsch, L. E., L. C. Anderson, R. P. Roberts, and K. M. Neubig. 2006. The genus Ericameria (Asteraceae). In Flora of North America 20:50-77. [*, A3]

van der Linde, K., G. J. Steck, K, Hibbard, J. S. Birdsley, L. M. Alonso, and D. Houle. 2006. First records of Zaprionus indianus (Diptera, Drosophilidae), a pest species on commercial fruits, from Panama and the United States of America. Florida Entomologist 89:402-404. [*, A3]

Venkatachalam, M., S. S. Teuber, W. R. Peterson, K. H. Roux, and S. K. Sathe. 2006. Antigenic stability of pecan [Carya illinoinensis (Wangenh.) K. Koch] proteins: effects of thermal treatments and in vitro digestion. Journal of Agricultural and Food Chemistry 54:1449-1458. [*, A1]

Verneij, M. J. A., N. D. Fogarty, and M. W. Miller. 2006. Pelagic conditions affect larval behavior, survival, and settlement patterns in the Caribbean coral Montastraea faveolata. Marine Ecology-Progress Series 310:119-128. [*, stud-drl, A3]

Vileno, B., K. Pierzchala, M. Czuba, P. Marcoux, A. Graczyk, P. G. Fajer, A. Sienkiewicz, and L. Forrσ. 2006. Oxidative stress-mediated protein conformation changes: ESR study of spin labeled staphylococcal nuclease. Journal of Physics: Condensed Matter 18:11–21. [*, A1]

Winkler, H., and K. A. Taylor. 2006. Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography. Ultramicroscopy 106:240-254. [*, A4]

Wu, F., and B. J. Gaffney. 2006. Dynamic behavior of fatty acid spin labels within a binding site of soybean lipoxygenase-1. Biochemistry 45:12510–12518 (PMID: 17029406). [*, A1]

Wulff, J. L. 2006. Rapid diversity and abundance decline in a Caribbean coral reef sponge community. Biological Conservation 127:167-176. [*, A3]

Wulff, J. L. 2006. Resistance vs. recovery: morphological strategies of coral reef sponges. Functional Ecology 20:699-708. [*, A3]

Wulff, J. L. 2006. A simple model of growth form-dependent recovery from disease in coral reef sponges. Coral Reefs 25:419–426. [*, A3]

Wulff, J. L. 2006. Sponge systematics by starfish: predators distinguish cryptic sympatric species of Caribbean fire sponges, Tedania ignis and Tedania klausi n. sp. (Demospongiae, Poecilosclerida). Biological Bulletin 211:83–94. [*, A3]

Youn, B., G. E. Sellhorn, R. J. Mirchel, B. J. Gaffney, H. D. Grimes, and C.-H. Kang 2006. Crystal structures of vegetative soybean lipoxygenase VLX-B and VLX-D, and comparisons with seed isoforms, LOX-1 and LOX-3. Proteins: Structure, Function, and Bioinformatics 65:1008–1020 (PMID: 17022084). [*, A1]

Zhu, F. X., X. Li, F. Zhou, S.-J. Gao, and Y. Yuan. 2006. Functional characterization of Kaposi's sarcoma-associated herpesvirus ORF45 by bacterial artificial chromosome-based mutagenesis. Journal of Virology 80:12187–12196. [*, A1]

Zhu, P., K. Taylor, and K. Roux. 2006. Structure of AIDS virus surface revealed: cryoelectron tomography shows 3D structure of surface spikes. BIOforum Europe 7/8 32–33 (copublished in Imaging and Microscopy 8:30–32). [A1]