2009 in the FSU Biological Science History project

2009 Publications, FSU Biological Science

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Abolhassani, M., and K. H. Roux. 2009. cDNA cloning, expression and characterization of an allergenic 60s ribosomal protein of almond (Prunus dulcis). Iran Journal of Allergy, Asthma and Immunology 8: 77-84.

Alvarez-Delfin, K., A. C. Morris, C. Snelson, J. T. Gamse, T. Gupta, F. G. Marlow, M. C. Mullins, H. A. Burgess, M. Granato, and J. M. Fadool. 2009. Tbx2b is required for ultraviolet photoreceptor cell specification during zebrafish retinal development. Proceedings of the National Academy of Sciences of the USA. 106:2023-2028.

Anderson, K. E., B. D. Inouye, and N. Underwood. 2009. Modeling herbivore competition mediated by inducible changes in plant quality. Oikos 118: 1633-1646.

Biju, K. C., T. G. Mast, and D. A. Fadool. 2009. Olfactory sensory-deprivation increases the number of pro-BDNF immunoreactive mitral cells in the olfactory bulb of mice. Neuroscience Letters 447:42-47.

Birchler, J. A., and H. W. Bass. 2009. Cytogenetics and chromosomal structural diversity. Pages 163-177 in J. L. Bennetzen and S. C. Hake. Handbook of Maize: Genetics and Genomics. Springer, New York.

Brusatte, S. L., T. D. Carr, G. M. Erickson, G. S. Bever, and M. A. Norell. 2009. A long-snouted, multi-horned tyrannosaurid from the Late Cretaceous of Mongolia. Proceedings of the National Academy of Sciences of the USA 41:17261-17266.

Butler, R. J., P. M. Galton, L. B. Porro, L. M. Chiappe, D. M. Henderson, and G. M. Erickson. 2009. Lower limits of ornithischian dinosaur body size inferred from a new Upper Jurassic heterodontosaurid from North America. Proceedings of the Royal Society B Biological Sciences 277:375-381.

Carter, A. J. R., E. Osborne, and D. Houle. 2009. Heritability of directional asymmetry in Drosophila melanogaster. International Journal of Evolutionary Biology. Article ID 759159.

Carter, A. J. R., T. M. Weier, and D. Houle. 2009. Effect of inbreeding on fluctuating asymmetry of wing veins in two laboratory strains of Drosophila melanogaster. Heredity 102:177-190.

Cason, A. M., B. S. Kwon, J. C. Smith, and T. A. Houpt. 2009. Labyrinthectomy abolishes the behavioral and neural response of rats to a high-strength static magnetic field. Physiology and Behavior 97:36-43.

Chadwick, B. P. 2009. Macrosatellite epigenetics: the two faces of DXZ4 And D4Z4. Chromosoma 118:675-681.

Chatterji, U., M. Bobardt, S. Selvarajah, F. Yang, H. Tang, N. Sakamoto, G. Vuagniaux, T. Parkinson, and P. Gallay. 2009. The isomerase active site of cyclophilin a is critical for HCV replication. Journal of Biological Chemistry 284:16998-17005.

Colley, B. S., M. A. Cavallin, K. C. Biju, and D. A. Fadool. 2009. Brain-derived neurotrophic factor modulation of Kv1.3 channel is disregulated by adaptor proteins Grb10 and nShc. BMC Neuroscience 10:8.

Dáttilo, W. F. C., T. J. Izzo, B. D. Inouye, H. L. Vasconcelos, and E. M. Bruna. 2009. Volatile recognition by Pheidole minutula (Myrmicinae), an Amazonian ant-plant specialist. Biotropica 41:642-646.

Davenport, R.A., and T.A. Houpt. 2009. D-cycloserine enhances short-delay, but not long-delay, conditioned taste aversion learning in rats. Pharmacology, Biochemistry and Behavior 91:596-603.

Erickson, G. M. 2009. Paleontologists in academia. Page 229 in W. W. Stein. The Top 256 Rules of Paleontology. Dragon’s Claw Press, Belle Fourche, South Dakota.

Erickson, G. M. 2002-2009. Paleobiology of Dinosaurs (Lecture manual). Hayden McNeil Press, Plymouth, MI. 120 pp.

Erickson, G. M., P. J. Makovicky, B. D. Inouye, C.-F. Zhou, and K. Gao. 2009. A life table for Psittacosaurus lujiatunensis: initial insights into ornithischian dinosaur population biology. Anatomical Record 292:1514-1521.

Erickson, G. M., O. W. M. Rauhut, Z.-H. Zhou, A. H. Turner, B. D. Inouye, D. Y. Hu, and M. A. Norell. 2009. Was dinosaurian physiology inherited by birds? Reconciling slow growth in Archaeopteryx. PLoS One 4:e7390.

Forde, A. J., H. S. Applewhite, and H. W. Bass. 2009. A laboratory and field survey of leaf feeding resistance in diverse maize inbred lines. Maize Genetics Newsletter 83:48-49.

Gaffney, B. J. 2009. High resolution EPR of mononuclear iron proteins. Pages 233–268 in G. Hanson and L.J. Berliner, eds. Biological Magnetic Resonance, Vol 28. High Resolution EPR: Applications to Metalloenzymes and Metals in Medicine. Springer, New York.

Gerstner, J. R., L. C. Lyons, K. P. Wright, Jr., D. H. Loh, O. Rawashdeh, K. L. Eckel-Mahan, and G. W. Roman. 2009. Cycling behavior and memory formation. Journal of Neuroscience 29:12824-12830.

Givnish, T. J., K. C. Millam, A. R. Mast, T. B. Patterson, T. J. Theim, A. L. Hipp, J. M. Henss, J. F. Smith, K. R. Wood, and K. J. Sytsma. 2009. Origin, adaptive radiation and diversification of the Hawaiian lobeliads. Proceedings of the Royal Society B Biological Sciences 276:407-416.

Gomulkiewicz, R., and D. Houle. 2009. Demographic and genetic constraints on evolution. American Naturalist 174:E218-E229.

Hampton, K. J., K. A. Hughes, and A. E. Houde. 2009. The allure of the distinctive: reduced sexual responsiveness of female guppies (Poecilia reticulata) to "redundant" male colour patterns. Ethology 115:475-481.

Hiratani, I, and D. M. Gilbert. 2009. Replication timing as an epigenetic mark. Epigenetics 4:93-97.

Hiratani, I., S. Takebayashi, J. Lu, and D. M. Gilbert. 2009. Replication timing and transcriptional control: beyond cause and effect. Part II. Current Opinion in Genetics and Development 19:1-8.

Hollis, B., J. Fierst, and D. Houle. 2009. Sexual selection accelerates the elimination of a deleterious mutant in Drosophila melanogaster. Evolution 63:324-333.

Houle, D. 2009. Brian Charlesworth. Pages 479–480 in J. Travis and M. Ruse, eds. Evolution: The First Four Billion Years. Harvard University Press, Cambridge, MA.

Izzo, T. J., E. M. Bruna, H. Vasconcelos, and B. D. Inouye. 2009. Cooperative colony founding alters the likelihood of interspecific competition between Amazonian plant-ants. Insectes Sociaux 56:341-345.

Jin, H., V. Guacci, and H.-G. Yu. 2009. Pds5 is required for homologue pair and inhibits synapsis of sister chromatid during yeast meiosis. Journal of Cell Biology 186:713-725

Johnson, M. O., E. Porcher, P.-O. Cheptou, C. G. Eckert, E. Elle, M. Geber, S. Kalisz, J. K. Kelly, D. A. Moeller, M. Vallejo-Marin, and A. A. Winn. 2009. Correlations among fertility components can maintain mixed mating in plants. American Naturalist 173:1–11.

Kang, Y, S. Andjelic, J. M. Binley, E. T. Crooks, M. Franti, S. P. N. Iyer, G. P. Donovan, A. K. Dey, P. Zhu, K. H. Roux, R. J. Durso, T. Parsons, P. J. Maddon, J. P. Moore, and W. C. Olson. 2009. Structure and immunogenicity studies of a cleaved, stabilized envelope trimer derived from subtype A HIV-1. Vaccine 27:5120-5132.

Kenworthy, R., D. Lambert, F. Yang, N. Wang, Z. Chen, H. Zhu, F. Zhu, C. Liu, K. Li, and H. Tang. 2009. Short hairpin RNAs delivered by lentiviral vector transduction trigger RIG-I-mediated IFN activation. Nucleic Acids Research. 37:6587-6599.

King, J. R., W. R. Tschinkel, and K. G. Ross. 2009. A case study of human exacerbation of the invasive species problem: transport and establishment of polygyne fire ants in Tallahassee, Florida, USA. Biological Invasions 11:373–377.

Kuang, E., F. Wu, and F. Zhu. 2009. Mechanism of sustained activation of ribosomal S6 kinase (RSK) and ERK by Kaposi sarcoma-associated herpesvirus ORF45: multiprotein complexes retain active phosphorylated ERK and RSK and protect them from dephosphorylation. Journal of Biological Chemistry 284:13958–13968.

Laskis, K. O., and W. R. Tschinkel. 2009. The seasonal natural history of the ant, Dolichoderus mariae, in northern Florida. Journal of Insect Science 9:2.

Lee, C. T., C. O. Puleston, and S. Tuljapurkar. 2009. Population and prehistory III: food-dependent demography in variable environments. Theoretical Population Biology 76:179-188.

Leips, J., J. M. L. Richardson, F. H. Rodd, and J. Travis. 2009. Adaptive maternal adjustments of offspring size in repsonse to conspecific density in two populations of the least killifish, Heterandria formosa. Evolution 63:1341-1347.

Lemmon, A. R., J. M. Brown, K. Stanger-Hall, and E. Moriarty Lemmon. 2009. The effect of missing data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference. Systematic Biology 58:130–145.

Li, X., and F. Zhu. 2009. Identification of the nuclear export and adjacent nuclear localization signals for ORF45 of Kaposi's sarcoma-associated herpesvirus. Journal of Virology 83:2531-2539.

Liu, Z., J. M. Robida, S. Chinnaswamy, G. Yi, J. M. Robotham, H. B. Nelson, A. Irsgler, C. C. Kao, and H. Tang. 2009. Mutations in the hepatitis C virus polymerase that increase RNA binding can confer resistance to Cyclosporine A. Hepatology 50:25-33.

Liu, Z., L. Xia, Y. Wu, J. Chen, and K. H. Roux. 2009. Identification and characterization of an arginine kinase as a major allergen from silkworm (Bombyx mori) larvae. International Archives of Allergy and Immunology 150:8-14.

Liu, Z., F. Yang, J. Robotham, and H. Tang. 2009. A critical role of cyclophilin A and its prolyl-peptidyl isomerase activity in the structure and function of HCV replication complex. Journal of Virology 83:6554-6565.

Lupinek, C., K. H. Roux, S. Laffer, I. Rauter, K. Reginald, M. Kneidinger, K. Blatt, T. Ball, I. Pree, B. Jahn-Schmid, J.-P. Allam, N. Novak, T., A. Drescher, F. Kricek, P. Valent, H. Englund, and R. Valenta. 2009. Trimolecular complex formation of IgE, FcεRI, and a recombinant nonanaphylactic single-chain antibody fragment with high affinity for IgE. Journal of Immunology 182:4817-4829.

Lyons, L. C., and G. Roman. 2009. Circadian modulation of short-term memory in Drosophila. Leaning and Memory 16:19-27.

Macy, B., M. Wang, and H.-G. Yu. 2009. The many faces of shugoshin, the "guardian spirit," in chromosome segregation. Cell Cycle 8:35-37.

Moriarty Lemmon, E. 2009. Diversification of conspecific signals in sympatry: geographic overlap drives multi-dimensional reproductive character displacement in frogs. Evolution 63:1155–1170.

Makovicky, P., D. Li, K. Gao, M. Lewin, G. M. Erickson, and M. A. Norell. 2009. A giant ornithomimid from the Early Cretaceous of China. Proceeding of the Royal Society B Biological Sciences 277:191-198.

Manandhar, P., K.-S. Chen, K. Aladealat, G. Mihajlovic, C. S. Yun, M. Field, G. J. Sullivan, G. F. Strouse, P. B. Chase, S. von Molnár, and P. Xiong. 2009. Detection of specific biomolecular interactions with micro-Hall magnetic sensors. Nanotechnology 20:355501.

Marks, D. R., K. Tucker, M. A. Cavallin, T. G. Mast, and D. A. Fadool. 2009. Awake intranasal insulin delivery modifies protein complexes and alters memory, anxiety, and olfactory behaviors. Journal of Neuroscience 29, 6734-6751.

McGinnis, K. 2009. Use of transgene induced RNAi to regulate endogenous gene expression. Methods in Molecular Biology 526, Transgenic Maize: Methods and Protocols. M. Paul Scott, ed. Humana Press, Totowa, NJ.

Miller, T. E, C. terHorst, and J. H. Burns. 2009. The ghost of competition present. American Naturalist173:347-353.

Miller, T. E., E. Gornish, and H. Buckley. 2009. Climate and coastal dune vegetation: disturbance, recovery and succession. Plant Ecology 206:97-104.

Moussallem, M. D., S. G. Olenych, S. L. Scott, T. C. Keller III, and J. B. Schlenoff. 2009. Smooth muscle cell phenotype modulation and contraction on native and cross-linked polyelectrolyte multilayers. Biomacromolecules 10:3062-3068.

Narayanan, S., F. Zhu, and Y. Yuan. 2009. Kaposi’s sarcoma-associated herpesvirus ORF45 interacts with kinesin-2 transporting viral capsid-tegument complexes along microtubules. PLoS Pathogens. 5:e1000332.

O’Donnel, J., K. A. Taylor, and M. S. Chapman. 2009. Adeno-Associated Virus-2 and its primary cellular receptor—cryo-EM structure of a heparin complex. Virology 385:434–443.

Qing, M., F. Yang, B. Zhang, G. Zou, Z. Yuan, J. M. Robida, H. Tang, and P. Shi. 2009. Cyclosporine inhibits Flavivirus replication through blocking the interaction between host cyclophilins and viral NS5 protein. Antimicrobial Agents and Chemotherapy 53:3226-3235.

Rivera, H. M., D. R. Oberbeck, B. S. Kwon, T. A. Houpt, and L. A. Eckel. 2009. Estradiol increases Pet-1 and serotonin transporter mRNA in the raphe nuclei of ovariectomized rats. Brain Research 1259:51-58.

Robotham, J. M., G. G. Hoffman, S. S. Teuber, K. Beyer, H. A. Sampson, S. K. Sathe, and K. H. Roux. 2009. Linear IgE-epitope mapping and comparative structural homology modeling of hazelnut and English walnut 11S globulins. Molecluar Immunology 46:2975-2984.

Rokyta, D. R., Z. Abdo, and H. A. Wichman. 2009. The genetics of adaptation for eight microvirid bacteriophages. Journal of Molecular Evolution 69:229-239.

Rokyta, D. R., and H. A. Wichman. 2009. Genic incompatibilities in two hybrid bacteriophages. Molecular Biology and Evolution 26:2831-2839.

Ruedi, E. A., and K. A. Hughes. 2009. Age, but not experience, affects courtship gene expression in male Drosophila melanogaster. PLoS One 4:e6150.

Ruse, M., and J. Travis. 2009. Evolution: The First Four Billion Years. Harvard Belknap Press, Cambridge, Massachusetts. 979 pp.

Samuelsen, C. L., and M. Meredith. 2009. Categorization of biologically relevant chemical signals in the medial amygdala. Brain Research 1263:33-42

Samuelsen, C. L., and M. Meredith. 2009. The vomeronasal organ is required for the male mouse medial amygdala response to chemical-communication signals. Neuroscience 164:1468–1476.

Sathe, S. K., G. M. Sharma, H. H. Kshirsagar, M. Su, and K. H. Roux. 2009. Effects of long term frozen storage on electrophoretic patterns, immunoreactivity, and pepsin in vitro digestibility of soybean (Glycine max L.) proteins Journal of Agricultural and Food Chemistry 57:1312–1318.

Sathe, S. K., M. Venkatachalam, G. M. Sharma, H. H. Kshirsagar, S. S. Teuber, and K. H. Roux. 2009. Solubilization and electrophoretic characterization of edible nut seed proteins. Journal of Agricultural and Food Chemistry 57:7846-7856.

Sauquet, H., P. H. Weston, C. L. Anderson, N. P. Barker, D. J. Cantrill, A. R. Mast, and V. Savolainen. 2009. Contrasted patterns of hyperdiversification in Mediterranean hotspots. Proceedings of the National Academy of Sciences of the USA 106:221-225.

Schrader, M., and J. Travis. 2009. Do embryos influence maternal investment? Evaluating maternal-fetal coadaptation and the potential for parent-offspring conflict in a placental fish. Evolution 63:2805-2815.

Sharma, G. M., K. H. Roux, and S. K. Sathe. 2009. A sensitive and robust competitive enzyme-linked immunosorbent assay for Brazil nut (Bertholletia excelsa L.) detection. Journal of Agricultural and Food Chemistry 57:769-776. 2009.

Shyu, L. F., J. Sun, H.-M. Chung, Y.-C. Huang, and W.-M. Deng. 2009. Notch signaling and cell cycle arrest in Drosophila polar follicle cells. Molecular Biology of the Cell 20:5064-5073.

Song, L. K., M. Larion, J. Chamoun, M. Bonora, and P. G. Fajer. 2009. Distance and dynamics determination by W-band DEER and W-band ST-EPR. European Biophysics Journal with Biophysics Letters 39:711–719.

Sugata, K., L. Song, M. Nakamura, S. Ueki, P. G. Fajer, and T. Arata. 2009. Nucleotide-induced flexibility change in neck linkers of dimeric kinesin as detected by distance measurements using spin-labeling EPR. Journal of Molecular Biology 368:626-636.

Tang, H., and H. Grisé. 2009. Cellular and molecular biology of HCV infection and hepatitis. Clinical Science (London) 117:49–65.

Tian, A. G., and W.-M. Deng. 2009. Par-1 and Tau regulate the anterior-posterior gradient of microtubules in Drosophila oocytes. Developmental Biology 327:458-464.

Travis, J., and D. N. Reznick. 2009. Adaptation. Pages 105-131 in M. Ruse and J. Travis, eds. Evolution: The First Four Billion Years. Harvard Belknap Press, Cambridge, Massachusetts.

Underwood, N. 2009. Effect of genetic variance in plant quality on population dynamics of a herbivorous insect. Journal of Animal Ecology 78: 839-847

Van der Linde, K., and D. Houle. 2009. Inferring the nature of allometry from geometric data. Evolutionary Biology 36:311-322.

Winkler, H., P. Zhu, J. Liu, F. Ye, K. H. Roux, and K. A. Taylor. 2009. Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes. Journal of Structural Biology 165:53-132.

Winn, A. A. and K.S. Moriuchi. 2009. The maintenance of mixed mating by cleistogamy in the perennial violet Viola septemloba (Violaceae). American Journal of Botany 96:2074-2079.

Wu, S., J. Liu, M. C. Reedy, H. Winkler, M. K. Reedy, and K. A. Taylor. 2009. Methods for identifying and averaging variable molecular conformations in tomograms of actively contracting insect flight muscle. Journal of Structural Biology 168, 485-502.

Wulff, J. L. 2009. Sponge community dynamics on Caribbean mangrove roots: significance of species idiosyncrasies. Smithsonian Contributions to Marine Science 38:501-514.

Yatsenko, A. S., M. M. Kucherenko, H. R. Shcherbata, M. Pantoja, K. A. Fischer, J. Madeoy, W.-M. Deng, M. Schneider, S. Baumgartner, J. Akey, and H. T. Ruohola-Baker. 2009. The conserved WW-domain binding sites in Dystroglycan C-terminus are essential but partially redundant for Dystroglycan function. BMC Developmental Biology 9:18.

Yokochi, T., K. Poduch, T. Ryba, J. Lu, I. Hiratani, M. Tachibana, Y. Shinkai, and D. M. Gilbert. 2009. G9a selectively represses a class of late-replicating genes at the nuclear periphery. Proceedings of the National Academy of Sciences of the USA 106:19363-19368.

Xu. X., J. M. Clark, M. Jinyou, J. Choiniere, C. A. Forster, G. M. Erickson, D. W. E. Hone, C. Sullivan, D. A. Eberth, S. Nesbitt, Q. Zhi, R. Hernandez, C.-K. Jia, F.-L. Han, and G. Yu. 2009. A Jurassic ceratosaur from China helps clarify avian digital homologies. Nature 459:940-944.

Yi, K, X. Wang, M. R. Emmett, A. G. Marshall, M. Stewart, and T. M. Roberts. 2009 Dephosphorylation of major sperm protein (MSP) fiber protein 3 by protein phosphatase 2A during cell body retraction in the MSP-based amoeboid motility of Ascaris sperm Molecular Biology of the Cell 20:3200-3208.


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