2007 Publications, FSU Biological Science

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Key to codes in square brackets          Back to history project index of years

Amarillo, F. E., and H. W. Bass. 2007. A transgenomic cytogenetic sorghum (Sorghum propinquum) BAC FISH map of maize (Zea mays L.) pachytene chromosome 9, evidence for regions of genome hyperexpansion. Genetics 177:1509–1526. [*, A1]

Beerli, P. 2007. Estimation of the population scaled mutation rate from microsatellite data. Genetics 177:1967–1968. [*, A3]

Bertin, M., S. M. Pomponi, C. Kokuhuta, N. Iwasaki, T. Suzuki, and W. R. Ellington. 2007. Origin of the genes for the isoforms of creatine kinase. Gene 392:273–282. [*, A1]

Burns, J. H., S. L. Halpern, and A. A. Winn. 2007. A test for a cost of opportunism in invasive plant species in the Commelinaceae. Biological Invasions 9:213–225. [*, A3]

Byun, K.-E., M.-G. Kim, P. B. Chase, and S. Hong. 2007. Selective assembly and guiding of actomyosin using carbon nanotube network monolayer patterns. Langmuir 23:9535–9539. [*, A1]

Cavnar, P. J., S. G. Olenych, and T. C. S. Keller. 2007. Molecular identification and localization of cellular titin, a novel titin isoform in the fibroblast stress fiber. Cell Motility and the Cytoskeleton 64:418–433. [*, A1]

Chase, P. B. 2007. Tropomyosin in the groove? Molecular insights into an inherited myopathy. Journal of Physiology 581:889. [edmat, A1]

Colley, B. S., K. C. Biju, A. Visegrady, S. Campbell, and D. A. Fadool. 2007. Neurotrophin B receptor kinase increases Kv subfamily member 1.3 (Kv1.3) ion channel half-life and surface expression. Neuroscience 144:531–546. [*, A2]

Crooks, E. T, P. L. Moore, M. Franti, C. S. Cayanan, P. Zhu, P. Jiang, R. P. de Vries, C. Wiley, I. Zharkikh, N. Schülke, K. H. Roux, D. C. Montefiori, D. R. Burton, and J. M. Binley. 2007. A comparative immunogenicity study of HIV-1 virus-like particles bearing various forms of envelope proteins, particles bearing no envelope and soluble monomeric gp120. Virology 336:245–262. [*, A1]

Davila, N. G., T. A. Houpt, and P. Q. Trombley. 2007. Expression and function of kainate receptors in the rat olfactory bulb. Synapse 61:320–334 (PMID: 17318880). [*, A2]

Erickson, G. M. 2002, 2003, 2005, 2006, 2007. Paleobiology of Dinosaurs (Lecture Manual). Hayden McNeil Press. Plymouth, MI. 120 pp. [bookau, A3]

Erickson, G. M., K. Curry Rogers, D. J. Varricchio, M. A. Norell, and X. Xing. 2007. Growth patterns in brooding dinosaurs reveals the timing of sexual maturity in non-avian dinosaurs and genesis of the avian condition [cover article]. Biology Letters (The Royal Society, London) 3:558–561. [*, A3]

Erickson, G. M. 2007. Bad to the bone—Tyrannosaurus rex bites again. Page 129 in T. R. Holtz, Jr. (ed.). Dinosaurs. Random House, New York. [chap, A3]

Fajer, P. G., M. Gyimesi, A. Malnasi-Csizmadia, C. R. Bagshaw, K. Sen, and L. Song. 2007. Myosin cleft closure by double electron–electron resonance and dipolar EPR. Journal of Physics: Condensed Matter 18:1–10. [*, A1]

Fajer, M. I., H. Li, W. Yang, and P.G. Fajer. 2007. Mapping electron paramagnetic resonance spin label conformations by the simulated scaling method. Journal of the American Chemical Society 129:13840-13846. [*, A1]

Gaffney, B. J. 2007. Anesthesia, analgesia and euphoria. Biophysical Journal 92:1–2 (PMID: 17028147). [*, A1]

Galiano, L., M. Bonora, and G. Fanucci. 2007. Interflap distances in HIV-1 protease determined by pulsed EPR measurements. Journal of the American Chemical Society 129:11004-11005. [*, stud-PGF, A1]

Gilbert, D. M. 2007. Replication origin plasticity, Taylor-made: inhibition vs. recruitment of new origins under conditions of replication stress. Chromosoma 116:341–347. [*, A1]

Gilbert, D. M., and D. Zink. 2007. Nuclear structure of normal and cancer cells. Genome Biology 8:312. [*, A1]

Golden, G., and T. A. Houpt. 2007. NMDA receptor in conditioned flavor-taste preference learning: blockade by MK-801 and enhancement by D-cycloserine. Pharmacology Biochemistry and Behavior 86:587–596 (PMID: 17350084). [*, A2]

Hampton, C. M., D. W. Taylor, and K. A. Taylor. 2007. Novel structures for ?-actinin: F-actin interactions and their implications for actin-membrane attachment and tension sensing in the cytoskeleton. Journal of Molecular Biology 368:92–104. [*, A]

Hoekman, D., C. Terhorst, A. Bauer, S. Braun, P. Gignac, R. Hopkins, S. Joshi, K. Laskis, N. Sanscrainte, J. Travis, and T. E. Miller. 2007. Oviposition decreased in response to enriched water: a field study of the pitcher-plant mosquito, Wyeomyia smithii. Ecological Entomology 32:92–96. [*, A3]

Houle, D. 2007. A dispatch from the multivariate frontier. Journal of Evolutionary Biology 20:22–23. [edmat, A3]

Houle, D. 2007. Genetic variation and human disease. In series Evolution and Medicine, ed. R. Nesse. Henry Stewart Talks, London. (multimedia presentation) [A3]

Houpt, T. A., J. A. Cassell, A. M. Cason, A.Riedell, G. J. Golden, C. Riccardi, and J. C. Smith. 2007. Evidence for a cephalic site of action of high magnetic fields on the behavioral responses of rats. Physiology and Behavior 92:665–674 (PMID: 17568635). [*, A2]

Houpt, T. A., J. A. Cassell, C. Riccardi, M. D. DenBleyker, A. Hood, and J. C. Smith. 2007. Rats avoid high magnetic fields: dependence on an intact vestibular system. Physiology and Behavior 92:741–747 (PMID: 17585969). [*, A2]

Houpt, T. A., J. A. Cassell, C. Riccardi, B. S. Kwon, and J. C. Smith. 2007. Suppression of drinking by exposure to a high-strength static magnetic field. Physiology and Behavior 90:59–65. [*, A2]

Iyer, S. P. N., M. Franti, A. A. Krauchuk, D. N. Fisch, A. A. Ouattara, K. H. Roux, L. Krawiec, A. K. Dey, S. Beddows, P. J. Maddon, J. P. Moore, and W. C. Olson. 2007. Purified, proteolytically mature HIV type 1 SOSIP gp140 envelope trimers. AIDS Research and Human Retroviruses 23:817–828. 2007. [*, A1]

Kang, Y., W. H. Outlaw Jr., P. C. Andersen, and G. D. Fiore. 2007. Guard-cell apoplastic sucrose concentration—a link between leaf photosynthesis and stomatal aperture size in the apoplastic phloem loader Vicia faba L. Plant Cell and Environment 30:551–558. [*, A1]

Kang, Y., W. H. Outlaw Jr., G. B. Fiore, and K. A. Riddle. 2007. Guard-cell apoplastic photosynthate accumulation corresponds to phloem-loading mechanism. Journal of Experimental Botany 58:4061–4070. [*, A1]

Kataoka, A., C. Hemmer, and P. B. Chase. 2007. Computational simulation of hypertrophic cardiomyopathy mutations in troponin I: influence of increased myocyte calcium sensitivity on isometric force, ATPase and [Ca²⁺]. Journal of Biomechanics 40:2044–2052. [*, A1]

Kataoka, A., B. C. W. Tanner, J. M. Macpherson, X. Xu, Q. Wang, M. Regnier, T. L. Daniel, and P. B. Chase. 2007. Spatially explicit, nano-mechanical models of the muscle half-sarcomere: implications for biomechanical tuning in atrophy and fatigue. Acta Astronautica 60:111–118. [*, A1]

Keller, T. 2005 and 2007. The Cell in Health and Disease. Hayden-McNeill, Plymouth, MI. 142 pp. [bookau, A1]

Kennish, M. J., S. B. Bricker, W. C. Dennison, P. M. Glibert, R. J. Livingston, K. A. Moore, R. T. Noble, H. W. Paerl, J. M. Ramstack, S. Seitzinger, D. A. Tomasko, and I. Valiela. 2007. Barnegat Bay-Little Egg Harbor Estuary: Case study of a highly eutrophic coastal bay system. Ecological Applications 17:S3-S16. [*, A3]

King, J. R., and W. R. Tschinkel. 2007. Range expansion and local population increase of the exotic ant, Pheidole obscurithorax, in the southeastern United States (Hymenoptera: Formicidae). Florida Entomologist 90:435–439. [*, A3]

Kuang, E., Q. Tang, G. G. Maul, and F. Zhu. 2007. Activation of p90 ribosomal S6 kinase (RSK) by ORF45 of Kaposi's sarcoma associated herpesvirus and its role in viral lytic replication. Journal of Virology 82:1838–1850 (PMID: 18057234) [*, A1]

Levitan, D. R., C. P. terHorst, and N. D. Fogarty. 2007. The risk of polyspermy in three congeneric sea urchins and its implications for gametic incompatibility and reproductive isolation. Evolution 61:2007–2014. [*, A3]

Li, H., M. Fajer, and W. Yang. 2007. Simulated scaling method for localized enhanced sampling and simultaneous "alchemical" free energy simulations: a general method for molecular mechanical, quantum mechanical, and quantum mechanical/molecular mechanical simulations. Journal of Chemical Physics 126:024106. [*, stud-PGF, A1]

Liu, Z., R. Kenworthy, C. Green, and H. Tang. 2007. Molecular determinants of nucleolar translocation of RNA helicase A. Experimental Cell Research 313:3743–3754. [*, A1]

Livingston, R. J., 2007. Phytoplankton bloom effects on a Gulf estuary: Water quality changes and biological response. Ecological Applications 17:S110–S128. [*, A3]

Lu, J., and D. M. Gilbert. 2007. Proliferation-dependent and cell-cycle regulated transcription of mouse peri-centric heterochromatin. Journal of Cell Biology 179:411–421. [*, A1]

Marks, D. R., and D. A. Fadool. 2007. Post-synaptic density 95 (PSD-95) affects insulin-induced Kv1.3 channel modulation of the olfactory bulb. Journal of Neurochemistry 103:1608–1627. [*, A2]

Mast, A. R., and J. L. Reveal. 2007. Transfer of Dodecatheon L. to Primula L. (Primulaceae). Brittonia 59:79–82. [*, A3]

Mast, A. R., and K. Thiele. 2007. Transfer of Dryandra to Banksia. Australian Systematic Botany 20:63–71. [*, A3]

McGhee, K. E., R. C. Fuller, and J. Travis. 2007. Male competition and female choice interact to determine mating success in the bluefin killifish. Behavioral Ecology 18:822–830. [*, A3]

McKee, D .T., M. O. Poletini, R. Bertram, and M. E. Freeman. 2007. Oxytocin action at the lactotroph is required for prolactin surges in cervically stimulated ovariectomized rats. Endocrinology 148:4649–4657. [*, A2]

Means, D. B., and J. Travis. 2007. Declines in ravine-inhabiting dusky salamanders of the southeastern U.S. coastal plain. Southeastern Naturalist 6:83–96.

Meredith, M., C. Samuelsen, C. Blake, and J. Westberry. 2007. Selective response of medial amygdala subregions to reproductive and defensive chemosignals from conspecific and heterospecific species. Chemical Signals in Vertebrates 11:367–378. [*, A2]

Miao, L., K. Yi, J. M. Mackey, and T. M. Roberts. 2007. Reconstitution in vitro of MSP-based filopodium extension in nematode sperm. Cell Motility and the Cytoskeleton 64:235–247. [*, A1]

Miller, T. E., J. H. Burns, P. Munguia, E. L. Walters, J. M. Kneitel, P. Richards, N. Mouquet, and H. Buckley. 2007. Evaluating support for the resource-ratio hypothesis: a response to Wilson et al. American Naturalist 169:707–708. [*, A3]

Moreno-Gonzalez, A., T. E. Gilles, A. J. Rivera, P. B. Chase, D. A. Martyn, and M. Regnier. 2007. Thin filament regulation of force redevelopment kinetics in rabbit skeletal muscle fibres. Journal of Physiology 579:313–326. [*, A1]

Munguia, P., C. Mackie, and D. R. Levitan. 2007. The influence of stage-dependent dispersal on the population dynamics of three amphipod species. Oecologia 153:533–541. [*, A3]

Nesmelov, Y. E., C. Karim, L. Song, P. G. Fajer, and D. D. Thomas. 2007. Rotational dynamics of phospholamban determined by multifrequency electron paramagnetic resonance. Biophysical Journal 93:2805–2812. [*, A1]

Nunnink, M., R. A. Davenport, B. Ortega, and T. A. Houpt. 2007. D-cycloserine enhances conditioned taste aversion learning in rats. Pharmacology Biochemistry and Behavior 87:321–330 (PMID 17561237). [*, A2]

Oakley, C. E., J.Chamoun, L. J. Brown, and B. D. Hambly. 2007. Myosin binding protein–C: enigmatic regulator of cardiac contraction. International Journal of Biochemistry & Cell Biology 39:2161–2166. [*, stud-PGF, A1]

Oakley, C. G., K. S. Moriuchi, and A. A. Winn. 2007. The maintenance of outcrossing in predominantly selfing species: ideas and evidence form cleistogamous species. Annual Review of Ecology, Evolution, and Systematics 38:437–457. [*, A3]

Outlaw, W. H., Jr. 2007. Plant Biology (BOT 3015 Lecture Guide). Hayden McNeil, Plymouth, MI. 255 pp. + CD of PowerPoint. [bookau, A1]

Periz, G., D. Dharia, S. H. Miller, and L. R. Keller. 2007. Flagellar elongation and gene expression in Chlamydomonas reinhardtii. Eukaryotic Cell 8:1411–1420. [*, A1]

Plötner, J., F. Köhler, T. Uzzell, P. Beerli, and C. Spolsky. 2007. Molecular systematics of amphibians. Pages 2573–2756 in Amphibian Biology, Volume 7. H. Heatwole, editor. Surrey Beatty & Sons. Chipping Norton, New South Wales, Australia. [chap, A3]

Poletini, M. O., D. T. McKee, J. E. Kennett, J. Doster, and M. E. Freeman. 2007. Knockdown of clock genes in the suprachiasmatic nucleus blocks prolactin surges and alters FRA expression in the locus coeruleus of female rats. American Journal of Physiology—Endocrinology and Metabolism 293:E1325-E1334. [*, A2]

Poulton, J., and W.-M. Deng. 2007. Cell-cell communication and axis specification in the Drosophila oocyte (review). Developmental Biology 311: 1–10. [*, A1]

Robida, J. M., H. B. Nelson, Z. Liu, and H. Tang. 2007. Characterization of hepatitis C virus subgenomic replicon resistance to cyclosporine A in vitro. Journal of Virology 81:5829–5840. [*, A1]

Roux, K. H. 2007. Broadly neutralizing antibodies are produced in some asymptomatic AIDS patients: renewed hope for vaccine development? Cellscience Reviews 4:1–9 epub. [inv, edmat, A1]

Roux, K. H., and K. A. Taylor. 2007. AIDS virus envelope spike structure. Current Opinion in Structural Biology 17:244–252. [inv, revp, A1]

Sasaki, T., and D. M. Gilbert. 2007. The many faces of the origin recognition complex. Current Opinion in Cell Biology 19:337–343. [*, A1]

Seal, J. N., and W. R. Tschinkel. 2007. Energetics of newly mated queens and colony founding in the fungus-gardening ants Cyphomyrmex rimosus and Trachymyrmex septentrionalis (Hymenoptera: Formicidae). Physiological Entomology 32:8–15. [*, A3]

Seal, J. N., and W. R. Tschinkel. 2007. Complexity in an obligate mutualism: do fungus-gardening ants know what makes their garden grow? Behavioral Ecology and Sociobiology 61:1151–1160. [*, A3]

Sen, K. I., T. Logan, and P. Fajer. 2007. Protein dynamics and monomer-monomer interactions in AntR activation by electron paramagnetic resonance and double electron-electron resonance. Biochemistry 46:11639–11649. [*, A1]

Sherdan, D. M., K. Aghoram, W. H. Outlaw Jr. 2007. Plant Biology Laboratory (BOT 3015L Laboratory Manual). Hayden McNeil, Plymouth, MI. 113 pp. bookau, A1]

Smith, C. R., and W. R. Tschinkel. 2007. The adaptive nature of non-food collection for the Florida harvester ant, Pogonomyrmex badius. Ecological Entomology 32:105–112. [*, A3]

Stearns, G., M. Evangelista, J. M. Fadool, and S. E. Brockerhoff. 2007. A mutation in the cone-specific pde6 gene causes rapid cone photoreceptor degeneration in zebrafish. Journal of Neuroscience 27:13866–13874 [highlighted by the editors in "This Week in the Journal"]. [*, A1, A2]

Steppan, S. J., O. Ramirez, J. Banbury, D. Huchon, W. Pacheco, L. Walker, and A. O. Spotorno. 2007. A molecular reappraisal of the systematics of the leaf-eared mice Phyllotis and their relatives. Pages 799–820 in D. A. Kelt, E. P. Lessa, J. A. Salazar-Bravo, and J. L. Patton (eds.). The quintessential naturalist: honoring the life and legacy of Oliver P. Pearson. University of California Publications in Zoology 134.

Storz, B. L., and J. Travis. 2007. Temporally dissociated, trait-specific modifications underlie phenotypic polyphenism in Spea multiplicata tadpoles, which suggests modularity. TheScientificWorldJournal 7:715–726. [*, A3]

Sun, J., and W.-M. Deng. 2007. Hindsight mediates the role of notch in suppressing hedgehog signaling and cell proliferation. Developmental Cell 12:431–442. [*, A1]

Swain, T. D., and J. L. Wulff. 2007. Diversity and specificity of Caribbean sponge-zoanthid symbioses: a foundation for understanding the adaptive significance of symmbioses and generating hypotheses about higher-order systematics. Biological Journal of the Linnean Society 92:695–711. [*, A3]

Tabak, J., N. Toporikova, M. E. Freeman, and R. Bertram. 2007. Low dose of dopamine may stimulate prolactin secretion by increasing fast potassium currents. Journal of Computational Neuroscience 22:211–222. [*, A2]

Tanaka, K., K. Uda, M. Shamada, K. I. Takahashi, S. Gamou, W. R. Ellington, and T. Suzuki. 2007. Evolution of the cytoplasmic and mitochondrial phosphagen kinases unique to annelid groups. Journal of Molecular Evolution 65:616–625. [*, A1]

Taylor, D. W., D. F. Kelly, A. Cheng, and K. A Taylor. 2007. On the freezing of lipid monolayer specimens for cryoelectron microscopy. Journal of Structural Biology 160:305–312. [*, A]

Taylor, K. A. 2007. Regulation and recycling of myosin V. Current Opinion in Cell Biology 19:67–74. [A1]

Taylor, K. A., S. Wu, M. C. Reedy, and M. K. Reedy. 2007. Imaging actomyosin in situ. Pages 321–368 in J. R. McIntosh (ed.). Methods in Cell Biology: Cellular Electron Microscopy. Academic Press, San Diego. [chap, A1]

Thiele, R., and B. D. Inouye. 2007. Nesting biology, seasonality and mating behavior of Epicharis metatarsalis Friese (Hymenoptera, Apidae) in northeastern Costa Rica. Annals of the Entomological Society of America 100:596–602. [*, A3]

Tomaiuolo, M., T. F. Hansen, and D. R. Levitan. 2007. A theoretical investigation of sympatric evolution of temporal reproductive isolation as illustrated by marine broadcast spawners. Evolution 61:2584–2595. [*, A3]

Tschinkel, W. R., and J. R. King. 2007. Targeted removal of ant colonies in ecological experiments, using hot water. Journal of Insect Science 7:41. [*, A3]

Turner, A. H., D. Pol, J. A. Clarke, G. M. Erickson, and M. Norell. 2007. A basal dromaeosaurid and size evolution preceding avian flight. Science 317:1378–1381. [*, A3]

Underwood, N. 2007. Variation in and correlation between rate of increase and carrying capacity. American Naturalist 169:136–141. [*, A3]

Venkatachalam, M., H. H. Kshirsagar, N. P. Seeram, D. Heber, T. E. Thompson, K. H. Roux, and S. K. Sathe. 2007. Biochemical composition and immunological comparison of select pecan [Carya illinoinensis (Wangenh.) K. Koch] cultivars. J. Agric. Food Chem 55:9899–9907. [*, A1]

Wulff, J. L. 2007. Disease prevalence and population density in three common Caribbean coral reef sponge species. Journal of the Marine Biological Association of the United Kingdom 87:715–720. [*, A3]

Wulff, J .L. 2007. Mangrove sponge havens of Belize. JMBA Global Marine Environment 6:4–5. [*, inv, pop, A3]

Yi, K., S. M. Buttery, M. Stewart, and T. M. Roberts. 2007. A ser/thr kinase required for membrane-associated assembly of the major sperm protein motility apparatus in the amoeboid sperm of Ascaris. Molecular Biology of the Cell 18:1816–1825. [*, A1]

Yu, H.-G., and D. E. Koshland. 2007. The Aurora kinase Ipl1 maintains the centromeric localization of PP2A to protect cohesin during meiosis. Journal of Cell Biology 176:911–918. [*, A1]